Bordetella parapertussis 12822: BPP3318
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Entry
BPP3318 CDS
T00140
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bpa
Bordetella parapertussis 12822
Pathway
bpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BPP3318 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpa03019
]
BPP3318 (rne)
03009 Ribosome biogenesis [BR:
bpa03009
]
BPP3318 (rne)
Enzymes [BR:
bpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BPP3318 (rne)
Messenger RNA biogenesis [BR:
bpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BPP3318 (rne)
Ribosome biogenesis [BR:
bpa03009
]
Prokaryotic type
rRNA processing factors
BPP3318 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CAE38603
UniProt:
A0ABU5X5C7
Q7W5H3
LinkDB
All DBs
Position
3573578..3576703
Genome browser
AA seq
1041 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEDRKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEKSKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVST
PAPAKAPAAAAATQGGLGGWFKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQDR
RGERHGSDRNRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEARAEREQTQQ
QQAAGQPRQERPSTAETGEEGGRGRGRRGRGRGRREEGQTDTPMTEQENMVAALAETVAA
ALPEKRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGAETGTDPER
KRRRRRSRRGRRSQEDGSTVNAEGVEGADDEQVDAPAGVADIETPAQPAESETVAAPVAV
SVAADEPAATIETAAAEPTAPQATEAPRAEPVVAAADTAPQAVQPVQAELTPVETPQAQA
QPAEPAAAAPVETAPVETAPVETAPVETAPAATTPVEPAEQAAAPVEAEAPVAQPEKTPE
PAAVRPAEAIVVPAQAAAPATGALHDVLDAAGLTWVETDPERHAQTQMRIAAAAAPVRLG
RERKPVASVSNEPLVQVETRH
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgttgcaatcgtcgac
ggccagaaactgatcgatctcgacatcgagactgccggtcgcgaacaacgcaaaggcaac
atctacaaaggcgtcatcacccgcatcgaacccggcctggaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcgcgcagtttcttcaaggaa
ggcgtggacgtgcgcaccgcacgcatccaggacgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctcgtcctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgcgtcgaaggcgaggaccgccaggaactgcgcgacaccatggagcagctcgatgtcccc
cagggcatgagcatcatcgcgcgcaccgccggcatcgggcgcaacgtcgacgaactccag
tgggacctgtcctatctgctgcaactctggaccgccatcgacggcgcggcgcgcgacaat
gccgccccgatcctgatctacctcgagtccagcctcgtcatccgcgcgatccgcgactat
ttttcgcccgagatcggcgaaatcctgatcgacaccgacgaaatcgccgaccaggccacc
gccttcatgagcgtggtcatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtactcgcgcacc
gtgcagctgccctcgggcggcgcggtggtcatcgaccacactgaagccctggttgccgtg
gacgtgaactcggcccgctccacgcgcggcgcggacatcgaggaaaccgcgctgcgcacg
aacctggaagccgccgaggaagtggcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggaggaccgcaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgccctgcatttcgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggagctgtcgcgccagcggctgcgtccggcgctcaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggaaaacaccgcggcggtgcacgcccag
gtgccggtcgacgtggccaccttcctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctggtgctgattcccaacaagcacctggagacgccgcac
caccatatcgaacgcctgcgccacgacgatccgcgcctggaaaaaagcaagaccagcttc
gagctggccgaggccccggccaccgacctcacctggcagccgcgcgagcacgagatcaag
gcgcgccccgaagcgctggtcaagggcatcacgcccgcgcagccagccccggtgtccacg
cccgcccccgccaaggcgcctgccgccgcggcggccacccagggcggactgggcggctgg
ttcaagcgcctgacctcctggctgggcggcagcgccgaaccggccaagaccgaaaccaag
tccgaagacgaaaagcgcggcgcgaaccgtgcgcggcgcgcccacgacggccaggaccgc
cgcggcgaacgccacggctcggaccgcaaccgccatcgccgcaatgagccccgcggcgac
cacgccgagagcggcgacgcgcgtcatcacgtgcgcggcggacgacgccaggaagagcgc
ggtgaacgcggcgagcgtggccagaaggaagcccgggccgaacgcgagcagacccagcaa
cagcaggcagccggccagccgcgccaggaacgcccctcgaccgccgagaccggcgaagaa
ggcggccgtggccgtggtcgtcgcggccgcggacgtggccgtcgcgaggaaggccagacc
gacacgcccatgaccgagcaggaaaacatggtggcggcactggccgaaaccgtggctgcc
gccctgcccgaaaagcgccaggcggcgcccgcgccggcggccgccgctgccgcggccctg
acggtggccgaagccgccagcagcaatgagctggctcccgtggccgaggatgccgacggc
atcgacggtatcgacgccaatgtcgacgccggcgccgaaacgggtaccgatcccgagcgc
aagcgtcgccgtcgtcgcagccgccgtggccgccgcagccaggaagacggcagcacggtc
aatgccgaaggcgtcgaaggcgccgacgacgagcaggtcgacgcgccggcgggcgtagcg
gacatcgagacgcctgcccagccggccgagtccgagaccgtggccgcccccgtggcagtc
agcgtggccgccgacgagcccgccgccacgatcgagaccgccgccgccgagcctaccgcg
ccgcaagctaccgaggcgccccgggccgaacccgtggttgcagccgccgacaccgccccg
caagcggtccagcccgtgcaagcggaactgacgccggtcgaaacgccgcaggcgcaagcc
cagccggctgagccggcagcggccgccccggtggaaacggctccggtcgaaacggctccg
gtcgaaacggccccggtcgaaacggctccggcggcaaccaccccggtcgagcctgccgag
caggccgcggccccggttgaagccgaagcgcccgtcgctcagcccgaaaagacgcccgag
cccgccgccgtccgtcccgccgaagccatcgtggtgcccgcgcaagcggccgcaccggca
accggcgcgctgcacgacgtcctcgacgccgccggcctgacctgggtcgaaaccgatccg
gaacgtcacgcgcaaacccagatgcgcatcgccgcggccgccgcgccggtgcgcctgggc
cgcgagcgcaagccggtggcttcggtttccaacgaaccgttggtgcaagtcgaaacgcgt
cactga
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