Brucepastera parasyntrophica: K7I13_12540
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Entry
K7I13_12540 CDS
T08309
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpaa
Brucepastera parasyntrophica
Pathway
bpaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K7I13_12540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpaa03021
]
K7I13_12540 (rpoB)
03400 DNA repair and recombination proteins [BR:
bpaa03400
]
K7I13_12540 (rpoB)
Enzymes [BR:
bpaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K7I13_12540 (rpoB)
Transcription machinery [BR:
bpaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K7I13_12540 (rpoB)
DNA repair and recombination proteins [BR:
bpaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K7I13_12540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF1398
Motif
Other DBs
NCBI-ProteinID:
ULQ59307
LinkDB
All DBs
Position
2627959..2631456
Genome browser
AA seq
1165 aa
AA seq
DB search
MFARNEAINRQYIGKNIRNFMELPDLIDIQLSSYEKFLQRDKTHIADSSEEIGLEDVFRS
TFPIESPNGDMLLEYEFYELDEGNIKFSEFECKQKGLTYSVPLKARINLIFQQTGEIRQK
DIYMGDIPLMTDRGTFIINGAERVVVSQIHRSPGVIFSHEKGIYSSRIIPYRGSWLEFEI
DQKKELIYAKIDRKKRILGTLFLRALGFETREEIIRCFYQIKTLKVLEDRSNHDELVGKI
FASAVYVTDESGEKKKLYRAGEKLHPHNIDELILNKIAEVDVIDFEAEGSLNSPMIINCF
DREEIRFSNKDSDNDEPTREDSLIAVYSVLMPGEPITIEAAEKDLNSMFFSSRRYDLGRV
GRYKLNKKFDYEQPVSEFTLVKEDIISTMKYLIKVYVGDESIDDIDHLGNRRVRSVGELM
TNTLKTAFSRMERIAKERMSLKETETIKPQDLISIKPIVAAIKEFFGSSQLSQFMDQVNP
LAELTHKRRLNALGPGGLSRDRASFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLANYTR
VNDYGFLETPYVKIANGKATNTVEYLSAMDEDKYYIAQASTAVGSDGKIKTDQISCRRHG
DYITRSPQEVQYMDVSPKQIISVSASLIPFLEHDDANRALMGSNMQRQAVPLVFPEPPRV
GTGMEGKCAYDSGVFIKARRSGTIEFVSAEKIIIIPTEDQKARDEYHLLKYQRTNQDTCY
HQRPTVIPGQKIEKGQPLADGPATWHGELALGRNILVGFVPWNGYNYEDAILISQRVVKD
DMFTSIHIKEFFTEVRETKLGPEKLTRDIPNTSEKSLDNLDGEGIIRIGAKVRSGDILVG
KVTPKSETETTPEFKLLNSIFGEKAREVRDSSLRVPHGVEGTIIDVQRLKRSEGDDLNPG
VDEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYMEDGTPLDICLNPLGVPS
RMNIGQIMESELGLAGQYLNEWYESPVFQSPSNEQIEEKLKEAGFPANSKVILRDGRTGV
PFDNPVFVGIIYFMKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALE
AYGAANTLQELLTIKSDDMNGRSKIYESIVKGEPSTAAGVPESFNVLVQELRGLALDFTI
YDAKGKQIPLTERDEELIAKAGSNF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcaagaaacgaggcgatcaaccgtcagtatatcggcaaaaatatccgtaatttt
atggaattgcctgacctcattgatattcagctttcatcatatgagaaatttctccagcgc
gacaagacacacattgcagattcttctgaagaaatcggccttgaagatgttttccgctca
acctttccgattgaaagcccgaatggagacatgctccttgagtatgagttttatgaactt
gatgaaggaaatataaaattttccgaatttgaatgcaagcaaaagggtttgacctactcg
gtccctctgaaggcccggattaacctgattttccagcaaaccggtgaaatcaggcagaaa
gatatatacatgggcgatattccgctcatgacagaccggggtacatttatcattaacgga
gcggaacgcgttgttgtatcgcagattcaccgttcaccgggtgttattttctcacatgaa
aagggaatttattccagcagaattattccgtaccgcggaagctggctggaatttgaaata
gatcagaaaaaagagctgatttacgcaaagatagaccgaaaaaaaagaattcttggaacg
ctttttctgcgggctctcggatttgaaaccagggaagagataatccgctgtttttaccag
ataaaaaccctgaaagttctggaagacagaagcaatcacgatgaactggtcggaaaaatc
tttgcttccgccgtatatgtaacggatgaaagcggcgaaaagaaaaaactgtaccgggca
ggagaaaaactccacccgcataatattgatgaactgattctcaataaaattgccgaagtc
gatgtaattgacttcgaggcggaaggttccctgaattctcccatgatcatcaactgtttt
gaccgggaagaaatccgcttctcgaacaaggacagcgataatgatgagcccacacgggaa
gattccctgatcgccgtttattccgttctcatgccgggtgagcctattactattgaggct
gcggaaaaggacctcaattcaatgttcttttcctcaaggcggtatgatctgggacgggtc
ggccggtataaactgaacaagaaatttgattatgagcagccggtctctgagttcaccctg
gttaaggaagatattatttccaccatgaaatatctcataaaggtgtatgtcggcgatgaa
tcaattgatgatattgatcatcttggtaaccgccgcgtccgctcggtcggcgaacttatg
accaatacccttaaaacggctttttcccgcatggaacgtatagcgaaagaacggatgagc
ctgaaagaaactgaaacgataaaaccgcaggatcttatttcgataaaaccgatagtcgct
gcaatcaaggagtttttcggttcaagccagctttcacagtttatggaccaggttaatccg
ctcgcggagctgacccacaaacgacgcctgaacgccctcggtcccggcggtttgagcaga
gaccgggcttcatttgaagtgcgtgacgttcattatacccattacggacgaatgtgtcct
attgaaactcctgaagggccgaacatcggtctgatcgtttcgcttgcgaattataccagg
gttaatgattacggttttcttgaaacgccttatgtgaaaatcgccaatggaaaagcgaca
aatacggtcgaatatctttccgcaatggatgaggacaagtattatattgcccaggcttcg
acagctgtcggaagcgatggaaaaattaagacggaccagatatcctgccggcgccacggt
gattacataacccgttcgccccaggaagtccagtatatggatgtttccccgaaacagatt
atttcggtttcggcgtcccttattcctttccttgagcatgatgacgcaaaccgcgcgctt
atgggttccaatatgcagcgccaggctgttcctcttgttttccccgaacctccccgggtc
ggcaccggtatggaaggaaagtgcgcatacgattcaggcgtttttatcaaggccagaaga
agcgggaccattgaatttgtttcagcggaaaaaattattatcattcccactgaagaccag
aaagcccgcgatgaatatcatctgcttaaataccagcggacaaaccaggatacctgttat
caccagcgtcctacggtaatccccggtcagaaaattgaaaagggccagcccctcgccgat
ggtcctgcgacctggcacggtgaactcgcgcttggaaggaatattcttgtcggttttgtc
ccgtggaacggctacaattatgaagacgcgattcttatatcccagcgggtcgttaaggat
gatatgtttacttccatccatataaaagagtttttcactgaagtccgggaaacaaaactc
ggtcctgaaaaactgaccagggatattccgaataccagcgaaaaaagccttgataacctt
gacggtgaaggcattatacgcatcggcgcgaaggtcaggtcaggtgatatacttgtcgga
aaagtaaccccgaaaagtgaaacggaaacgactcctgaattcaaactgcttaattccatt
ttcggtgaaaaagcgcgcgaagtccgcgactcttctctccgtgttccgcatggcgttgaa
gggacaattattgatgtccagcggctgaaacgttctgaaggtgatgacctgaaccccggc
gttgacgaggttgtaaaggttctgatcgcgactaaacgcaagctccgcgaaggtgataaa
atggccggacgccatgggaataagggtatagttgcccgtatccttccggaagaagacatg
ccgtacatggaagacgggactcccctcgatatctgtctgaatccgctgggtgttccctcg
cgtatgaatatcgggcagataatggaatccgaacttggtcttgccggacaatatctgaat
gaatggtatgaatctcctgttttccagtcgccttcaaacgagcagattgaggaaaaactg
aaggaagccgggttccctgcaaattcgaaggttattctccgggacggacgtaccggcgtt
ccttttgataatccggtattcgtcggtattatttactttatgaaactgcatcatcttgtt
gacgataaaatgcacgcccgttcaacagggccttattcgctggttacccagcagcctctc
ggcggtaaagcccagttcggcggtcagcgtctcggtgaaatggaagtctgggcgctcgaa
gcctatggcgctgcaaatacgctgcaggagcttttgacaatcaaatctgatgacatgaac
ggacgttcaaagatttatgaatcgattgtaaagggagaaccttcgactgctgccggtgtg
ccggaatcctttaacgttcttgtgcaggaactccggggcttggccctcgacttcaccatt
tatgatgcgaagggcaaacagataccgctgaccgagcgggacgaggaactgatcgcaaag
gccggttcaaatttttaa
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