Brevibacillus parabrevis: PSE45_00695
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Entry
PSE45_00695 CDS
T08846
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpab
Brevibacillus parabrevis
Pathway
bpab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSE45_00695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpab03400
]
PSE45_00695 (mfd)
Enzymes [BR:
bpab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSE45_00695 (mfd)
DNA repair and recombination proteins [BR:
bpab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSE45_00695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
WDV95553
LinkDB
All DBs
Position
109792..113340
Genome browser
AA seq
1182 aa
AA seq
DB search
MQVIINPMKQDSNVGTIVAGLEKGLHEQLVSGLAGSARQTLMAALKQMTGRPVCVVTHNM
YQAQKVYEDLIELVPSDQVLLYPGNELIGSELAIASPEMLAQRIHVFNRLAQGFTGFLVA
PFAGLRRLVVPPEVWKEAQITLSVGDELDIESFLSRCIELGYERVDMVERKGELSVRGGI
IDLYPIDSEWPVRIELFDVEIDSIRTFDMLSQRSLESVQTYILGPAKEMIASTPLLMEAA
VRLEQKLGETVAKLKDGAAKEKVVERIGSDVERMKQGQRFAQLYSYVSVIYPSQDTLISY
MPSETLLIMDEPSRVLDTAAQLQKEEAEWLTGRIIQGEYMANLSLSRTYEDIVSHKKRQI
VHLSLFLRQSPKTQPQNIVNLTCRTMQNFHGQMNVLKTELARWKKSQDQIVFVAADLERA
KRLERVLHDYEMEADVLTEAVEVVPPGRPTIILGNLQTGFELPLNKLVVITEGEVFTAKQ
RKARKVQQTMNNAERIKNYLELKPGDFVVHINHGIGKYLGIETKEILGIHKDYLHIQYAA
GDSLFVPIDQIDHVQKYVASEEAQPKIYSLGGSEWKRVKNKVQSSVKDIAEDLIKLYAAR
EAAVGHAFSSDTTEQRDFESMFPYQETPDQLRAIAEVKSDMERRRPMDRLVCGDVGYGKT
EVAIRAAFKAVMDGKQVAVLVPTTILAQQHYETFRERFADYPIRVEVLSRFRSRKEQNAT
LKGLKEGTVDVVIGTHRLLSKDLTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVITLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYSPALVREAIEREMARDGQVFFL
YNQVQGIEQMAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGV
DIPNVNTLIIHNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGEVKQEAV
TPVEINLQLDAYIPSMYITDSRQKIEMYKKFVAVSTLEDVDDLAEELLDRFGPVPQPVDN
LLTISRLRVYALQHHITEISQKNPDEIKLVLHSSQNNNIDGGALFALASNWSRRLGLSGG
QQITITVKVKGLREDEGVQLIEKLLRQFHQVRKDTGTESPVS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcatcattaacccgatgaaacaagactcgaacgtcgggacaattgtggctggt
ttggagaaaggtctgcatgagcagcttgtctccggtctagcaggctcagcccgacagaca
ctgatggcggcactgaaacagatgaccgggcgtccggtttgtgtcgtcacgcataacatg
taccaagcacaaaaagtatacgaggatcttattgagctggttccttctgatcaagtgctg
ctttatccgggaaacgagctgattggctctgagcttgccatcgccagtcccgagatgctg
gcgcagcgcattcatgtattcaaccgtctggcccaaggctttacgggttttttggttgcg
ccattcgccggattgcgccgcctggttgtgcctcccgaagtgtggaaagaggcgcagatt
acgctgtctgtcggtgacgagctggatatcgaatcgtttttgtcccgctgtatcgagctt
ggttacgagcgcgtcgatatggtcgagcgaaaaggcgaactgagcgttcgcggcggaatt
atcgacctgtacccgattgattccgagtggcctgtgcgcatcgagctgttcgatgtggag
attgactcgatccgtacgttcgacatgctttcccagcgctcgcttgaatcggtgcaaacc
tacattttgggcccggcaaaagaaatgatcgcctctacgcctttgctgatggaagcggct
gttcgcttagagcagaagctcggtgaaaccgttgccaagctgaaagatggcgccgccaag
gaaaaagtggtcgagcggattggttcggatgtcgagcgtatgaaacaagggcagcgtttt
gctcagctgtactcgtacgtttccgtcatttatccgtcacaggacacgctgatctcctac
atgccgtctgaaaccctcttgatcatggatgagccttcccgcgttttggatacggcagca
cagctgcaaaaagaagaagcagagtggctgaccggacgaatcattcagggcgagtacatg
gctaacctgagcctgtcccgcacttatgaagacatcgtttcccacaagaagcggcagatt
gtccacctgtctttgttcctccgacaatctcccaagacccagccgcaaaacatcgtcaac
ctgacctgtcgcactatgcagaacttccacggacagatgaatgtgctgaaaacagagctg
gcccgctggaaaaagtctcaggaccagatcgtttttgtcgcggccgatctggagcgtgcc
aaacgtctggagcgcgtcctgcacgattatgagatggaagcagatgtgttgaccgaagcg
gttgaggtagtaccgccagggcgtcctacgatcatcttggggaacctccagacaggcttc
gagctgcccctgaacaagctggtcgttattacggagggcgaagtatttaccgccaagcag
cgtaaagcgcgcaaagttcagcagacgatgaacaatgcggagcggatcaaaaattacttg
gagctaaagcccggcgattttgtggtgcacatcaatcacgggattgggaaataccttgga
attgaaaccaaggaaatactcggaattcataaagattaccttcacattcaatacgcagca
ggcgacagcctgtttgtgccgatcgatcaaatcgaccatgtgcaaaagtacgtggcgagc
gaagaagcccagccgaaaatctacagcttgggcggaagcgaatggaagcgggtcaaaaat
aaagtccagtcttccgtcaaagacattgccgaggatttgatcaagctgtacgctgcgcgc
gaagcagcggtcggtcacgccttttcttcagatacaaccgagcagcgcgattttgagtcg
atgttcccgtatcaggagactcccgaccagttgcgggcaatcgctgaggtcaaaagcgat
atggagcgcagacgcccgatggatcgcctcgtttgcggagacgtgggttacggaaaaaca
gaagtggcgattcgcgcagcgttcaaggctgtcatggacggcaaacaggtggctgttctc
gttccgacgacgattttggcgcagcagcattacgagacgtttcgtgagcgttttgccgac
tacccgatcagggttgaggtgttgagccgttttcgctcgcgcaaggaacaaaacgctacg
ttaaaaggactgaaggaaggcactgtcgatgtcgtcatcggaacgcatcgtttgctgtcc
aaagacttgacgtttcgcgaactcggactgctcatcgtcgacgaggagcagcgtttcggt
gtgagtcacaaagaaaagctgaagcaaatcaagacaaatgtcgatgttatcacgttgacc
gcgacgccaatcccgcggacgctgcacatgtcgatgctgggtgtgcgtgacttgtctgtc
atcgagacaccgccagaaaaccgtttccctgtgcagacgtacgtaatggaatacagtcct
gcgctggtgagagaagcgattgagcgcgagatggcgcgcgacggccaagtatttttcctc
tacaatcaggtgcaaggcattgagcagatggctgaacaaatatccatgctcgtgcctgat
gcacggatcgcggtagcgcacggccagatgaacgagagcgagctggaaggcgtcatcctc
gactttttggaagggaattttgacgtgttggtcagcacgacgatcattgagaccggggtg
gacatcccgaacgtgaacacgctgatcatccacaatgccgacaaaatgggcctgtcccaa
ctgtatcagcttcgcggaagggttggacgttcgaaccggattgcttatgcttacttcaca
taccaacgggacaaggtgctgacagaagtcgcagaaaaacggcttcaggcgatcaaggaa
tttacggaactcggctccggcttcaagatcgccatgcgcgacttgtcgatccggggggct
ggtaatttgctcggtgccgagcagcacgggtttatcaatacagtcggtttcgacctgtac
agccagatgctcaaggaagcgattgacgagttgaagggagaggtcaagcaggaagcggtt
acgcctgtggaaatcaatctccagctcgatgcttacatcccgtctatgtacattaccgac
agccggcaaaagatcgagatgtacaaaaagtttgtggcggtatccacgctggaggatgtc
gacgatctggcagaggaattgttggaccgtttcggccctgttccgcagccggttgacaat
ctcctgaccatttcccgtttgcgtgtctatgcgctgcaacaccacatcaccgagatcagc
caaaaaaatccggatgaaatcaagctcgttctccattctagccaaaacaacaacattgat
ggcggtgcgctgtttgcgcttgccagcaactggagccggaggttggggctctcaggtgga
caacagatcacgattactgttaaagtaaaggggttaagggaagacgaaggtgtacagctg
atcgagaagctgcttcgtcaatttcaccaggtgcgtaaagacaccggtacggagagtcct
gtgtcctaa
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integrated database retrieval system
