Brevibacillus parabrevis: PSE45_16770
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Entry
PSE45_16770 CDS
T08846
Name
(GenBank) RNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpab
Brevibacillus parabrevis
Pathway
bpab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSE45_16770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpab03400
]
PSE45_16770
Enzymes [BR:
bpab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSE45_16770
DNA repair and recombination proteins [BR:
bpab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSE45_16770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WDV93310
LinkDB
All DBs
Position
3660218..3661165
Genome browser
AA seq
315 aa
AA seq
DB search
MPLEPITPFEPIQTETIPAGSNWIAQVKWDGVRMLTYHDGNKTQLINRKKNDRTRQYPEF
ARLERYCSASSVILDGEMIAFDSQKPSFHEIMKRDSLRKELSIQLAIEQTPVTYMVFDVL
YWNGSWVTDKPLGERQEILAQIMLPEPNVQIVQNVSDPHSLYDVMKQHHMEGIVCKDMTS
TYLPSGKDARWQKLKIFHDLYAAIGGVTLRDGVVNAVLLGLFDDAGRLVYIGHAGTGKLT
QRDWRDLTERIKPLRLDSMPFANQPERKKDTLWLKPELIAKVQFMEWTSGLTMRQPSIQA
FVDGSLADCTWKQIN
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgccacttgaaccgatcaccccttttgaaccgatccaaaccgaaacgataccagccgga
agcaactggattgcccaggtgaagtgggacggggtcagaatgctcacctatcacgacggc
aacaagacacagctcatcaatcgcaaaaagaatgatcgcacgaggcaataccccgaattt
gcccggctcgaacgctactgttccgcctcatctgtcattctcgacggagagatgatcgct
tttgacagccaaaaaccgtctttccacgaaatcatgaaaagagacagcctgcgcaaggaa
ctgagcatccagctcgccatcgagcaaactcccgtcacctacatggtgtttgacgtcctg
tattggaatggcagctgggtaaccgacaaaccgctcggcgagagacaagagattcttgcg
cagatcatgcttcccgagccaaatgtgcagatcgtacaaaatgtcagtgacccgcacagc
ttgtacgatgtgatgaagcaacatcacatggaaggaatcgtctgcaaagacatgacgagc
acctacctcccgagcggaaaagatgcgcgttggcaaaaactcaagatttttcacgatctg
tatgccgcaatcggcggtgtcacgctgcgcgatggcgtcgtgaatgccgtcctgcttggc
ttgtttgacgacgccggaagacttgtgtacatcggtcatgcaggcaccgggaagctgacc
cagcgcgattggcgcgacctgaccgaacgaatcaaaccgctgcgcctagacagcatgcct
tttgccaatcaaccggaacgaaaaaaagacactctctggctgaaaccggagctgatcgcc
aaagtccagttcatggaatggacctccggattgacgatgcgccagccgagtattcaggcg
tttgtcgatggcagtttggctgactgtacgtggaagcaaatcaattga
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integrated database retrieval system
