Bacillus pacificus: LMD38_03905
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Entry
LMD38_03905 CDS
T07947
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpac
Bacillus pacificus
Pathway
bpac03030
DNA replication
bpac03430
Mismatch repair
bpac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMD38_03905 (dnaE)
03430 Mismatch repair
LMD38_03905 (dnaE)
03440 Homologous recombination
LMD38_03905 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpac03032
]
LMD38_03905 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpac03400
]
LMD38_03905 (dnaE)
Enzymes [BR:
bpac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMD38_03905 (dnaE)
DNA replication proteins [BR:
bpac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LMD38_03905 (dnaE)
DNA repair and recombination proteins [BR:
bpac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LMD38_03905 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Flavokinase
UDPGP
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UEP95532
LinkDB
All DBs
Position
737261..740587
Genome browser
AA seq
1108 aa
AA seq
DB search
MKFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIH
PIIGLTASIFSEEEEKSYPLVLLAENEIGYQNLLKISSSIMTKSKEGIPKKWLAHYAKGL
IAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFGNFYMSLQHHAIQDELLLQEKLPVFI
SRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTDQYYLKSSDEMEAL
FSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNETNDMYLRRVCEEGLQKRYGTPK
EVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHENHILTGPGRGSAAGSLVSYVLEITD
IDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYGQLRVAQIVTFGTLAA
KAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDAYEESQSLREFIQGNLLHERVFEIA
KRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQEGHNDVYVTQYPADALEELGLLKMDFLGL
RNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTFQLLGRGDTTGVFQLESGGMRNVLRGL
KPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRKIEYLHPDLKPILERTYGVIVYQEQI
MQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQGCLQNGYDETSAEKIYDLIVR
FANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGNEDKIVQYIRETKRKGFH
VLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMATVTALIEEREKKMFEDLFEFCLRMPSK
FVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYANLARDLGDAVPKSKYVQGEELSF
IEQLNKEKEVLGFYLSSYPTAQYVKLAKELEIPTLAQAMRHKKKVQRAIVYITSVRVIRT
KKLQKMAFITFCDQNDEMEAVLFPETYIHFSDKLQEGAIVLVDGMIELRNHKLQWIVNGL
YPLEEMDVYEGKKDASVYVKLPSQYEKKLLNQVTKILFDYSGFAKVLIYYEKEHKMVQLS
RSLSIHPSEECLGALREIVGEENVVVKI
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtttgtgcatttacaatgtcaaaccgtttttagtttattaaaaagtgcttgtaaa
attgatgaacttgtagttagggcgaaagagctcggttattcatcacttgctattacggat
gaaaatgttatgtatggcgttattccgttttataaagcatgtaagaaacatggtatacat
cctattatcggcttaacagcttctatttttagtgaagaagaagaaaagtcttatccgctt
gtcttacttgctgaaaatgaaataggttatcaaaatttattaaagatctctagtagcatt
atgacgaagtcaaaagaaggtattcctaagaaatggcttgcacattatgcgaaaggatta
attgctatttcaccaggtaaagatggggaaatcgaacaattattattagaagacaaagag
agtcaagctgaagaagtagctcgtatgtatcaaaatatgttcggcaatttttatatgagt
ttacagcatcatgcgattcaagatgaactgcttctgcaagagaaattacctgtatttata
agtaggataaatattccagtcgtcgcaacaaacgatgtacgctacatcaatcaaagtgac
gcacttgttcatgaatgcttattatctgttgaaagtggaacgaaaatgacggatccagat
aggccgaggctgaaaacagatcaatattatttaaaatcatcagatgaaatggaagcacta
ttttctcacgtagaagaagcgatttataacacagtagaaattgcagaacgttgcagagta
gaaataccgtttcatgtaaatcaattaccgaaatttcctgttccatctaacgaaacgaat
gatatgtatttacgccgcgtttgtgaagaaggattgcagaaacgttatggtacgccgaaa
gaagtacatataaagcgtttgaatcatgaattaaacgtgatttctagcatggggtttagt
gattatttcctcattgtctgggattttatgaagtacgcgcatgaaaatcatattttaaca
ggaccaggtcgtggatcagcggctggctcactcgtttcttacgtattagaaattacagat
attgatccaattgaatacgatctattatttgaaaggtttttaaaccccgaacgtgtgaca
cttccagatattgatattgattttccggatataagacgtgatgagatgattcgatatgtg
aaggataaatatggtcagcttcgtgttgctcaaattgtaacgttcgggacgctggcagcg
aaagcggcaattagagatattgcgcgtgtaatggggcttccgccgcgagatatcgacata
ttctcaaaacttatcccatcaaagcttggtataacgttaaaagatgcatatgaggaatcg
caatcactccgtgagtttatacaaggaaaccttttgcatgagcgtgtgtttgaaattgca
aaacgtgtagaaggcttaccgcgtcatacgtctattcatgcagctggcgttattatgagc
caagagccattaaccggaagtgttgcaattcaagaagggcataacgatgtgtatgttacg
caatacccagctgatgcattagaagaacttgggttgctcaagatggactttttaggatta
cggaatttaacgttacttgaaaatattataaagtttatcgtgcaaaaaacaggaaaagaa
atcgatataagaaatttaccactgcaagatgaaaagacattccaattgttaggtagaggg
gatacaacaggtgtattccagcttgaatcaggtggtatgcgaaatgtacttcgcgggtta
aagccgaatgaatttgaagatattgttgctgttaactcgttatatagaccaggaccgatg
gagcaaattccaacctttattgaatcaaagcatggaaaaagaaaaattgaatatttacat
ccggacttaaaaccgattttagaaagaacatacggtgtaattgtataccaagaacaaatt
atgcaaattgcgtcgaagttggcgggcttctcgctcggagaagcagatttattacgccgt
gcagtgagtaaaaaaaatcgtgatattttagatcaggaacgtaagcattttgtgcaaggt
tgtttacaaaatggttatgacgagacatctgcagagaaaatttacgatttaattgtaaga
tttgcaaattacggctttaaccgaagtcacgctgtagcctacagtatgattggatatcag
cttgcctacttaaaagcgaattatacgctggaatttatgacggcactattatcgagtgca
attggaaatgaagataagattgtgcagtatatacgcgaaacgaagcgaaaaggttttcat
gttttgccgccgtctcttcagagaagtggttacaatttccaaatagaaggaaatgcgata
cgttacagcttactttccattcgaaacatcggaatggctacagtgacagcattaatcgaa
gaacgagagaaaaaaatgtttgaagatttatttgaattttgtctgcgcatgccatcaaag
tttgtaacggagcgaaatttagaggcgttcgtctggtctggatgttttgatgattttggt
gtttcgagaacgaatttatggaaaagtcttaaaggagcgttagagtatgccaatcttgca
cgtgatttaggagatgctgttccgaaatcaaaatacgtacaaggagaagagctctctttt
attgaacagttaaataaagagaaggaagtactaggtttttatttatcaagctatccgaca
gcgcagtatgtgaagttagcgaaagaattagaaattccaactctcgctcaggcgatgcga
cataagaaaaaagtacaaagagctatcgtgtacataacaagcgtgagagtgattcgtacg
aaaaagttgcaaaagatggcatttattacattttgtgatcaaaatgatgaaatggaagca
gttcttttccccgagacgtatatacatttctcagataagttacaagaaggagcaattgtt
ttagttgacggcatgattgagcttagaaatcataagctgcaatggattgtaaatggacta
tatccgttagaagaaatggatgtgtatgagggaaaaaaagatgcgtctgtttacgtgaaa
ttgccgtctcaatatgagaaaaagcttttaaatcaggttactaaaatattgtttgactat
tcgggttttgcgaaagtactaatttattatgaaaaggaacataaaatggtacaattatct
cgaagtttatcgattcatccaagtgaagaatgtttaggagcacttcgtgaaattgtcggg
gaagaaaatgtggttgtgaaaatataa
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