Bacillus pacificus: LMD38_04445
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Entry
LMD38_04445 CDS
T07947
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bpac
Bacillus pacificus
Pathway
bpac03410
Base excision repair
bpac03430
Mismatch repair
bpac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LMD38_04445 (recJ)
03430 Mismatch repair
LMD38_04445 (recJ)
03440 Homologous recombination
LMD38_04445 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpac03400
]
LMD38_04445 (recJ)
DNA repair and recombination proteins [BR:
bpac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LMD38_04445 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LMD38_04445 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMD38_04445 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UEP95634
LinkDB
All DBs
Position
complement(849216..850877)
Genome browser
AA seq
553 aa
AA seq
DB search
MHWKQLDIPFENHPHYANMLYLAKHVNIHPLLGYHLFVHGIQTEEQLWSFLYPDPSQFHN
PFLLNDMKRAVDRILKAIQQKESIYIFGDYDCDGITSSTILKQALEKLGAHVMTRLPLRE
EGYGLSPLAVNSLPKNISLLITVDNGSSAHPAIKLAKEKGIDIIVTDHHEVLGEHPACFA
FINPKRKDNTYPYPHLCGAGVALKLIQALFLTLKQDWIKETWNYIEYATIGTIADVMPLT
GENRAICWFGLYKMRNCPNKLLQLFREQLQIKYIDSTTIGFLIGPMLNSCGRISDPNIGA
AILQKAEPTVEDVKLLINLNNKRKQLTTEQFKLASEIIELQSLEKDSLLVVPGDFHKGII
GILASKISSHYKRPTIVLTQDGIGSARSGNGSKFSIIQAIQSCSELLKKFGGHAAAAGLS
IAPEESHIQQFRACMQEAAQQQNTSQPTSYFISEFPIYNFPNHLFDDLMALEPYGNGHPK
PSFRSKNIFACGHSCFGKNKEHVEFFFSKKRAYAYSHGHLFQNWNRYNRMDVLYTPHSYE
KQDFLINDLQLIQ
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcattggaaacaacttgatattccatttgaaaatcatccgcactacgcgaacatgctg
tacctagcaaaacatgtaaacatccatcctttactcggttatcatttgtttgttcatggt
attcaaaccgaagaacaattatggtcgttcttatatcctgatccttcacaattccacaat
ccttttctactcaatgatatgaagcgagcagtcgatcgtattttaaaggctattcagcaa
aaagaaagcatttatatttttggtgactacgattgcgacggaattacttcttcaacaatt
ttaaaacaagcactagaaaagctcggtgcccatgtaatgacaaggctacctttacgagaa
gaagggtatggattatcaccacttgctgtgaattctcttcctaaaaatataagcctatta
attaccgttgacaacggctccagtgcacatccagcaataaagctcgcaaaagaaaaagga
atcgatataattgtgacagatcaccatgaagtattaggagaacatccagcttgtttcgca
tttataaatcctaaaagaaaggataatacatatccgtacccgcacttatgcggagctggt
gttgctttaaaattaatacaagctctttttctaacattaaaacaagactggataaaagaa
acatggaattatattgaatatgcaacaataggaacaattgccgacgtcatgccattgact
ggagaaaatagagccatttgttggtttggtctctataaaatgcgaaactgtccaaataaa
cttttacaattatttcgtgagcaattacaaatcaaatatattgatagcactactattgga
tttctcattggacccatgttgaactcctgcggacggatatctgaccctaacatcggtgca
gctatcctccaaaaagcagaaccaacagtagaagatgttaaactgcttataaatttaaat
aacaagcgcaagcaattaactactgagcagttcaaattagcatccgaaatcattgaacta
caatccttagaaaaagattcattactcgttgtaccaggagattttcacaaaggtattatt
ggcatactagcttctaaaatctctagccattataaaaggcctacaattgtacttacccaa
gatggaataggctctgcaagaagcggaaatggaagtaagttttcaattatacaagcgatt
caatcttgcagtgaactattgaaaaaattcggaggacatgctgctgcggctggattatct
attgctccagaagaatcacacatccaacagtttagagcgtgcatgcaagaagcagcacaa
caacaaaatacgtcccagccaacttcatattttataagtgaattcccaatctataacttt
ccgaatcatttatttgatgatttgatggcacttgaaccctatggaaacggacatccaaaa
ccttcttttcgaagcaaaaacatatttgcatgtggacactcctgctttgggaaaaataaa
gaacatgttgaattctttttttcaaaaaagcgagcctatgcttattcgcatggtcactta
tttcaaaactggaatcgatataatcgaatggatgttttatatacaccccattcttacgaa
aaacaagattttcttatcaatgatcttcaattaattcaatga
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