Bacillus pacificus: LMD38_05520
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Entry
LMD38_05520 CDS
T07947
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bpac
Bacillus pacificus
Pathway
bpac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMD38_05520 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpac03021
]
LMD38_05520 (rpoD)
Transcription machinery [BR:
bpac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMD38_05520 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DUF2408
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UEP95836
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All DBs
Position
1061451..1062578
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AA seq
375 aa
AA seq
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MADKPARSKQIETEMTLEQVKEQLTELGKKRGVLTYEEIAERMNGFEIESDQMDEYYEYL
GEQGIDLVGDNDNDEGPNNRQIAKSEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLS
AEEEIRLATRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVE
KFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRE
PSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAY
ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK
LRHPSRSKRLKDFLE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaaccagctcgttctaaacaaattgaaactgaaatgacccttgagcaagtg
aaagaacaactcactgagctcggaaaaaaacgtggcgttcttacatatgaagagattgca
gaacgcatgaatggatttgaaattgaatccgatcaaatggatgaatactatgaatattta
ggtgaacaagggatcgacttagttggcgacaatgacaacgacgaaggccctaataatcgc
caaatagcaaaatcggaagaagaattcgacctcaatgatttaagcgtaccaccaggggtt
aaaatcaacgatcctgttcgtatgtatttaaaagaaattggtcgtgtagatttactatct
gcagaagaagaaattcgacttgcaacgcgtattgaagaaggcgatgaagaagcgaaacgt
cgtcttgcagaagcaaacttacgtcttgtagtaagtattgcaaagcgctacgtgggccgt
ggtatgcttttcttagacttaattcaagaagggaatatgggtctaattaaagcggttgaa
aagttcgattatcgtaaaggtttcaaatttagtacgtatgcaacttggtggattcgccaa
gcaattacacgtgcgattgcagaccaagcaagaacaattcgtatcccagttcatatggtt
gaaacgattaataagttaattcgtgtacaacgtcaattattacaagatttaggacgtgaa
ccatctcctgaagagattggtgaagaaatggatcttgctccagaaaaagtacgtgaaatc
ttaaaaattgcacaggagccagtttctcttgaaacaccgattggtgaagaagatgactcc
catttaggtgatttcattgaagaccaagaagcaacatcgcctgcggaccatgcagcgtat
gaattgctaaaagaacaattagaagatgtgttagatacactaacagatcgtgaagaaaat
gttctacgtcttcgttttggtttagatgatggacgaactcgtacgcttgaagaagttggg
aaagtattcggcgtaacgagagaacgtatccgtcaaattgaagcaaaagcactacgtaaa
ttgagacatccaagccgtagtaagcgccttaaggatttcttagaatag
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