Bacillus pacificus: LMD38_17020
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Entry
LMD38_17020 CDS
T07947
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bpac
Bacillus pacificus
Pathway
bpac03420
Nucleotide excision repair
bpac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMD38_17020
03430 Mismatch repair
LMD38_17020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpac03400
]
LMD38_17020
Enzymes [BR:
bpac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMD38_17020
DNA repair and recombination proteins [BR:
bpac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMD38_17020
MMR (mismatch excision repair)
Other MMR factors
LMD38_17020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
Viral_helicase1
UvrD_C_2
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UEP93054
LinkDB
All DBs
Position
complement(3256788..3258530)
Genome browser
AA seq
580 aa
AA seq
DB search
MILISSEDTIDIEQHFKVTAGPGAGKTHWLINHIKNTLKNSKRLEKTRKIACITYTNIAV
ETILNRLGTQSVSQVEVSTIHSFLYSHVVKPYLTHIAELFDIEIQKIKGHDTIEPKHNKV
QFWLENHSMNDKLRHPYTINQLIKLPENKEALFDWLSSVKYSFNSELKLNLRGKDSKAKQ
LRKIVKILETDLFSYKKIYWKDGKIDHDDVLYFSYELITRYPFILSVLRAKFPYFFIDEF
QDTNPIQAKIVSLLAEEETIVGVIGDPAQSIYSFQGASIEEYLKFKIENQSEYTITENRR
SSNQIIDLLNEIRTDIDQTTIRNVDHDRPILFVGNSMEAYNEIQEKYGNGMFIQTLARDN
PTANAMKFAVDNSKLNTKLLDELALKDNTKRFNIIKNSMEALEFAKHSDYKNAIKIMSAN
FIRYSEKEQFKKSVLVLQKLIQRQGTLLEEPLMEFYQLIREDIEMPGFRKGASQDFYNTY
SYKEVALCITYKEDISQHRTIHKSKGDEFQNVLLIVDTIEFLTNPNLAEDEEQRIYYVGI
SRAMDRLFIVTPELSKVNRAIIESKFNFQIIDLEKEPQLI
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgattcttatttcttctgaagatacaatagatattgagcaacatttcaaagttactgcg
gggcctggcgccggtaaaacgcactggctaattaatcatattaaaaacacattaaaaaat
tctaagagattagagaaaactcgaaaaatagcatgcataacatatacaaacatagctgta
gaaactattttaaacagactaggaactcaatccgtcagtcaagtagaagtttcaactatt
catagcttcttatatagtcatgttgttaaaccatatcttactcatatagcagaactattt
gacatagaaattcaaaaaataaagggtcatgatacgatcgaacctaaacataataaagtt
caattttggttagaaaatcattctatgaatgataagttaaggcacccatatacaataaat
caattgataaaattaccagaaaataaagaagcactattcgattggttatcgagtgttaaa
tatagttttaatagtgaactaaaattaaatttaagaggtaaggatagtaaggctaagcag
ttacgtaagatagtaaaaattttagaaacagatttatttagttataaaaaaatatattgg
aaggacggtaaaatcgatcatgatgatgtgctgtattttagttatgaattgattacacgg
tacccctttattttaagtgtgttacgtgctaagttcccttatttttttatagatgaattt
caagatactaatccgattcaagctaagatagtatccttattagcagaagaagaaactatt
gtaggggtaattggagatcctgcacaatcaatatattcatttcaaggtgctagtatagaa
gagtaccttaaattcaaaattgaaaatcaaagtgaatatactattacagaaaatagacga
agttcaaatcaaataatagatttattaaatgaaattagaacagatattgatcaaactaca
attagaaatgtagaccatgatagacctatcttatttgtagggaatagcatggaggcatat
aatgaaattcaagaaaaatacggtaatggcatgttcattcaaaccttagctagagataat
ccaaccgcaaatgcaatgaaatttgcggtagacaatagtaagctaaatactaaactatta
gatgaattagctttaaaggataataccaagcgctttaatattataaaaaattcaatggaa
gctctagagtttgctaaacatagtgattataaaaatgctataaaaataatgagtgctaat
tttattcgttattctgaaaaagagcaattcaaaaaatccgtcttagtcttacaaaaatta
atacaaagacaagggacacttttggaagagcctttaatggaattctatcaattaattaga
gaagacatagagatgcctggttttagaaaaggtgctagccaagatttttataatacatat
tcttataaagaggtagcactatgtataacctataaagaagatattagtcagcatcggact
attcataaatctaaaggggatgagtttcaaaatgtcttattgatagtagatacgatagag
tttcttactaacccaaacttagctgaagatgaagaacaacgaatttattatgtaggtata
agtagagctatggatagactatttatagtgacgcccgaattatcaaaagtgaatcgagca
ataatagagtctaaattcaattttcaaataatagatttagaaaaagaaccgcaattaatt
taa
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