Bacillus pacificus: LMD38_24815
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Entry
LMD38_24815 CDS
T07947
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bpac
Bacillus pacificus
Pathway
bpac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMD38_24815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpac03019
]
LMD38_24815
03009 Ribosome biogenesis [BR:
bpac03009
]
LMD38_24815
Enzymes [BR:
bpac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMD38_24815
Messenger RNA biogenesis [BR:
bpac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMD38_24815
Ribosome biogenesis [BR:
bpac03009
]
Prokaryotic type
rRNA helicases
LMD38_24815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Gypsy
Motif
Other DBs
NCBI-ProteinID:
UEP94447
LinkDB
All DBs
Position
complement(4827032..4828609)
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AA seq
525 aa
AA seq
DB search
MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL
LDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKH
PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL
FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP
ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK
RKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEENDSVTVVAAALK
MMTKEPDTTPIALTSEPPVVARGGGSKKRGGNGGGYRDGNRNRSRDGRGGDGRNRDRNRD
GRNRDGNRDRNRDGGNRGRRGEGQGRPGSSNGRGERKHHSRKPQA
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttcgagaattaggattaagtgattctttactgcaatctgttgaaagtatg
ggctttgaagaggctacgccaattcaagctgaaacaattccacatgcattgcaaggtaag
gatattattgggcaagcacaaacaggtacagggaaaacagcagcattcggattaccacta
ttagataaagtggatacacataaagaatcggttcaaggtattgttatcgcgccaacgcgt
gaattagcaattcaagttggagaagagctatacaaaattggtaaacataaacgcgttcgt
atcttaccaatttacggtggtcaagatattaaccgccaaattcgtgctctaaaaaaacat
ccacacattattgttggtacgccgggtcgtattttagatcatattaaccgtaaaacactt
cgcttacaaaacgtagagacagtggttcttgacgaagcggatgaaatgttaaacatgggc
ttcattgaagatattgaagcaattttaacagatgtgccagaaacacaccaaacattacta
ttctcagcgacaatgccggatccaatccgtcgtattgctgagcgtttcatgactgagcct
caacacattaaagtaaaagcaaaagaagtaacaatgccaaacattcagcagttctattta
gaagtgcaagaaaagaaaaagtttgatgtattgacacgcttattagacattcaatctcca
gagcttgcgattgtattcggtcgtacaaagcgtcgtgttgatgaattatcagaagcatta
aatttacgtggttatgctgcggaaggtatccacggtgatttaactcaggcgaaacgtatg
tctgtattacgtaagttcaaagaaggttctattgaagttcttgttgcaacagacgttgct
gcgcgtggtcttgatatttcaggtgtaacacacgtatacaacttcgatattccacaagat
ccagaatcatacgttcaccgtattggccgtactggtcgtgcaggtaaaaaaggtattgca
atgctatttgtaacaccacgtgaatctggacaattaaaaaatatcgagcgtacaacaaaa
cgtaaaatggaccgcatggatgcaccaacacttgacgaggcactagaaggtcaacaacgt
ttaatcgctgaaaaacttcaaaacacaattgaaaatgaaaacttagcatactacaagcgt
attgcggaagaaatgttagaagagaacgactctgtaacagtagtagctgctgctttaaaa
atgatgacaaaagagccagatacaactccaatcgctttaacatcagaaccaccagttgtt
gcaagaggtggcggttctaaaaaacgcggcggtaacggaggcggataccgtgatggtaac
cgtaatcgtagtcgtgatggacgcggtggcgatggtcgtaaccgtgaccgcaatcgtgat
ggtcgtaatcgtgacggtaaccgtgatcgcaatcgtgatggcggcaaccgtggtcgtcgt
ggagaaggtcaaggtcgcccaggatcttcaaacggacgcggcgaaagaaaacatcatagc
cgtaagccacaagcttaa
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