Bacillus pacificus: LMD38_26530
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Entry
LMD38_26530 CDS
T07947
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bpac
Bacillus pacificus
Pathway
bpac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMD38_26530 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpac03019
]
LMD38_26530 (dbpA)
03009 Ribosome biogenesis [BR:
bpac03009
]
LMD38_26530 (dbpA)
Enzymes [BR:
bpac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMD38_26530 (dbpA)
Messenger RNA biogenesis [BR:
bpac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMD38_26530 (dbpA)
Ribosome biogenesis [BR:
bpac03009
]
Prokaryotic type
rRNA helicases
LMD38_26530 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEP94735
LinkDB
All DBs
Position
5144515..5145960
Genome browser
AA seq
481 aa
AA seq
DB search
MSKKEFFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI
PLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK
QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMT
MLFSATLPEDVERLSRTYMNAPTHIEIKVAGITTDKIEHTLFEAIEDEKLSLLKDVTTIE
NPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATD
VAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEY
IGFEIPKAIGPSKEEVMKGKAAFEEKIHAKPIIKKDKNADINKGIMKLYFNGGKKKKIRA
VDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKVHEAI
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaagagttttttgagtataaattaagtaaagaaattgtaagggcacttact
gggttagggtatgatcatccaacagaagtacaaggtgaggttattccagtcgcattacaa
aagaaggatcttgttgtgaagtcccagacgggaagtggaaaaacagcttcatttggtatt
ccactttgtgagatggtggagtgggaagagaataaaccacaagcattagttttaacacca
acgagagagcttgcggtacaggtgaaagaagatattacaaatatagggcgattcaaaaga
attaaagccgccgcaatttatggtaagtccccatttgcacgtcaaaaattagagttaaag
caaaagacgcatattgtagtagggactccagggcgtgtattggatcatattgaaaaaggg
accctttctttagagcgattaaaatatttagtgattgatgaagcggacgaaatgctaaac
atgggctttatcgatcaagtagaggcaattattgatgaattacctacaaatagaatgaca
atgctattttcagcaactttaccggaagatgttgaaaggttatcacgtacatatatgaat
gcaccaactcatattgaaattaaagtggctgggattacgacggataaaattgaacatacc
ctttttgaggcgatagaagacgagaagctttcactacttaaagatgtaacaacgattgag
aatcctgatagctgtattattttctgccgtacacaagaaaatgtagatcatgtatataga
caattaaaacgagctaactatccttgtgacaaaatacatggtggtatggtacaagaagat
cgttttgaagtcatggatgattttagaaaaggaaaattccgttatttagtagcaacagac
gtagctgcgagaggaattgatattgataatattacacatgttattaattatgatattcca
cttgaaaaagaaagctatgtacatcgtactggaagaacgggacgagctggaaatagtgga
aaagctattacatttataacaccatatgaaaatagatttttagaagagattgaggagtat
attggctttgaaattccaaaggcaattggaccttcaaaagaagaagttatgaaagggaaa
gctgcatttgaagaaaagatacatgctaaaccaattataaagaaagataaaaatgcagac
atcaacaaaggcattatgaagctgtactttaatggcgggaagaaaaagaaaattagggcg
gtagatttcgtcggtacaattgctaaaattaaaggtgttacagcagaagatataggtatt
attacgatacaagataatgtttcttacgtcgaaatattaaatggaaaaggaccacttgtc
ttgaaagtcatgaagactacaacgattaaagggaaacaactaaaagttcatgaagcaatt
aagtaa
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