KEGG   Bacillus pacificus: LMD38_28555
Entry
LMD38_28555       CDS       T07947                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
bpac  Bacillus pacificus
Brite
KEGG Orthology (KO) [BR:bpac00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:bpac02048]
    LMD38_28555
Enzymes [BR:bpac01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     LMD38_28555
Prokaryotic defense system [BR:bpac02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   LMD38_28555
SSDB
Motif
Pfam: T1R_D3-like SWI2_SNF2 ResIII EcoR124_C HSDR_N DEAD Phage_integr_3
Other DBs
NCBI-ProteinID: UEP97680
LinkDB
Position
unnamed:complement(334778..337936)
AA seq 1052 aa
MIKIPHKDEAEVERRLIEVLGEGHNQWNYRPDLKSEEDLWKNLRQKITQNNLSEIGEHPI
SDKEFDNIKTELLSKTQTPFDAARWLKGENGIARITIEREDVSLGSMSLVLYSNQDIGGG
ISTYEVVHQIAKQNANVDGRDRRFDVTLLINGLPIVQIELKQVSAKDGVFQAYNQIKKYA
EEGMFRNNIFSTLQLFVISNEQTTRYFANALPKDMHKKFIFSWRTTDNRKVENLYEFVKQ
VLNIPDAHRLIANYTIVSEDQDNKALMVLHPYQIHAIEALFTSTTKHESGYVWHATGSGK
TLTSFVSTKLLARKPGVDRTIMLIDRKDLDNQTTTEFTKFASEFNTGISSGNAKSNSLIV
GTGSAKELSDTLLSDSNSNTVIITTRQKLEAALRYAQRQEEQKGTHRFKKLLGQHIVFVV
DECHRALSAEGMKEIKEFFPNSTWFGFTGTPIFDVNKKQAKGRLARTTRDQYGEVLHTYT
IKNALDDGAVLGFQVEHEDTVEPTSLNNYIFAKLRQNEKYAHFSDDKINDIIDQMDSMEK
EAYLEPSSFEKDIHIQKVIRKIFRPDNAYTKFDFQNGRPQKSAILTTNSIDMAKRYYQAI
KEMTKDPEWLTKEFVGHPIRTGRTIEDPDFPRIAITYSIQENEENAKQIQDEMQDIIKDY
NDYYRTAWSIEDIERYNGDINNRLARKKAEFKEFGKQIDLVIVVDRLLTGFDAPTIQTLF
VDRNLSYANLIQAFSRTNRTYPGKTKGLIVTFRKPSTMEQNVKDATKLYSEAQEESNLVY
PTYVESKKRFKKAHKVLTTLVPNSADINEHSPLETRIEFVKAFQGLNNAYEALVTYDDYN
DDMEKSTALQEQVNTLEEYIGVYNTIKGSLVDEGGQDGPEADFSDIEFYGENAIKIYDID
STYIDRLLGTYSANNQNIRDDIEKTLQKLKKSEIVKGVYRAILNAIDSKEIDSEEDILGV
KRRFFTDTRKKAIEDFASTWFVEEDELHTSAIQYVIGTDPIPNIGGIINSKQFDKYKAVH
PDAKPLKYGPEMKRQWRKTLDEVIVPLDNELR
NT seq 3159 nt   +upstreamnt  +downstreamnt
atgataaagataccgcataaagatgaagctgaagtagaacgtcgactgattgaagtgtta
ggagaagggcataatcagtggaattatcgtccagatttaaaatcggaagaagatttatgg
aagaacttgcgtcaaaagattacacaaaataatttatcagaaattggggaacatccaatt
tctgataaagaatttgacaatattaaaacagaattactatcgaaaacacagacacccttt
gatgctgctagatggcttaaaggagagaatggaattgctcgtattacgattgaacgtgaa
gatgtttcactggggtcgatgtcgttggtgttgtattccaaccaagacattggtggcgga
atctcaacttacgaagtcgttcatcagattgcgaaacaaaatgcaaacgttgatggtcgt
gatcgccgatttgatgtgacactcttaatcaatgggttgccaattgttcaaattgaattg
aaacaagtgagtgccaaagacggcgtattccaagcctataatcaaatcaagaaatacgca
gaagaaggaatgtttagaaataatatcttttctactcttcagttatttgtcatttccaat
gaacaaacgactcgctattttgccaatgcgctgccaaaagacatgcataaaaaatttatc
tttagctggcgaacaacagacaatcgaaaagtagaaaatctttatgaatttgtaaaacaa
gtcttaaatattccagatgcacatcggttaattgctaattatacaattgtgagtgaggat
caagacaataaagcattaatggtcttacacccttatcaaattcatgcgattgaggccttg
tttacatctactacgaaacatgaatcaggatatgtttggcatgcgactggttcaggaaag
acgttgacaagttttgtttctacgaagctattggctcgtaaaccaggtgtagatcgtacg
attatgctgattgatcgaaaagacttggataatcaaactacaacggaattcactaaattt
gcttccgagtttaataccggtatttcttctggtaatgccaagtctaatagcttgattgtc
ggaaccggaagtgcgaaagagctaagtgatactctactttctgattctaattctaataca
gtgattattaccactcgtcaaaaattagaagctgctttgcgctatgcccaaagacaagag
gaacaaaaaggaacccaccgttttaagaaactactggggcaacatattgtctttgtcgtg
gatgaatgccatcgagcattaagtgcagaaggaatgaaagagattaaagaatttttccct
aattctacatggtttgggtttacgggtacaccgatatttgatgtaaataaaaagcaagct
aaaggtcgattagctcgcactactcgtgatcaatatggtgaagtcttacatacttatacc
attaaaaacgcgttagacgatggggcagttttaggatttcaagttgagcacgaggatacg
gttgagccaacatcattaaataattatatttttgctaagttgcgtcaaaatgaaaaatac
gctcattttagtgatgataaaattaatgacattattgatcaaatggatagtatggaaaag
gaagcatatcttgaaccatcttctttcgaaaaggatattcatattcaaaaagtcattcgt
aagattttccgaccagataatgcctatacaaaatttgattttcaaaatggtcgtcctcaa
aagtctgccattttaacaacaaattctattgatatggcgaaacggtactatcaggcgatc
aaggaaatgactaaagatccagaatggttgacgaaagaatttgttgggcatccaattcga
acggggcgtacgattgaagatccagattttccacggattgctatcacctattcgatacaa
gaaaacgaggaaaatgctaaacaaattcaagatgaaatgcaagatattattaaggactat
aacgactattatcgtactgcttggtcaatagaggatattgaacgatataatggcgatatc
aacaatcgcttagctcgtaagaaagcagaattcaaggaatttggaaaacaaattgactta
gtcattgttgtagaccgcttattgactggatttgatgcaccaacgattcaaacattattt
gtggatcgaaatttaagttatgccaatttgatccaagccttttctcgaaccaatcgtacc
tatccaggaaagacaaaaggattgattgtgacattccggaaaccttcgacaatggaacaa
aatgttaaggatgccacgaagttatattctgaagcacaagaagaatctaatcttgtttat
ccaacttatgttgaatcgaagaaacgttttaaaaaggctcacaaagtattaacaacgtta
gttcccaattcagctgatattaacgagcactcacctcttgaaacccggattgaatttgtg
aaagctttccaagggctaaacaatgcctatgaagctttagttacatatgatgattacaac
gatgatatggagaaatcaacagcacttcaagaacaggtaaataccttagaagaatatatt
ggtgtatacaacacgattaagggttcattagtagatgaagggggccaagatggaccggag
gcagatttctcagacattgaattctatggagaaaatgcaattaaaatctatgatattgac
tcaacctatattgaccgactattaggaacatactcagccaataatcagaatatccgtgac
gatatcgaaaaaacactgcaaaaattgaagaaatcagaaattgttaaaggcgtgtaccgt
gcaattttaaatgctattgattccaaagaaatagattcagaggaagatattcttggagtg
aaacgacgctttttcactgatacacgtaagaaggcgattgaagattttgcgagtacttgg
tttgtggaagaagatgagctacatacatctgcgattcaatatgtgataggaacggatcct
attccgaatattggaggaatcatcaacagcaagcaatttgataagtataaagctgtacat
ccagatgcaaaaccattgaaatacggaccagaaatgaagcgtcagtggagaaagacatta
gatgaagtcattgtacctttggataacgagttgagataa

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