Bradyrhizobium pachyrhizi: QA639_08005
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Entry
QA639_08005 CDS
T09303
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bpah
Bradyrhizobium pachyrhizi
Pathway
bpah02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpah00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QA639_08005 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpah03021
]
QA639_08005 (rpoD)
Transcription machinery [BR:
bpah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QA639_08005 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WFU57447
LinkDB
All DBs
Position
1751225..1753357
Genome browser
AA seq
710 aa
AA seq
DB search
MATKAKTLQVKDKEKDDKAADAPEKDAADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQL
NEVLPSDTTSPEQIEDIMSMLSDMGINVTEADDSEGEDEKDDGDDETDNELVEVTQKAVT
EVKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQA
IIIWRDELNEGKIFLRDIIDLEATYAGPESKGGINPNLIGNNGAEGTAAEGNGGDAQGSA
PAHVAPPAAPPSPTPFRAAPAGGEAATEEKDPAEAAAEGDMDDDEFENQMSLAAIEAELK
PKVVETFDKIASEYKKLRRLQEQDIANQLQSESLSPSQERKYKKLKDEIIVEVKSLRLNQ
ARIDSLVEQLYDINKKLVSFEGRLLRLGDSHGVAREDFLRNYQGSELDPRWLNRVSKLSA
KGWKNFVHHEKDRIKDLRHEIQSLAALTGLEIGEFRKIVHGVQKGEREARQAKKEMVEAN
LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
ADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKE
PLSLETPVGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRF
GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcaaagacgctgcaggttaaggacaaggaaaaagacgacaaggcagcg
gatgctcctgagaaggatgccgctgacgcgccgtcgccgttgctcgacctgtcggatgcc
gcggtgaagaagatgatcaagcaggccaagaagcgcggcttcgtgaccttcgatcagctc
aacgaagtgctgccctccgatacgacctcgcccgaacagatcgaagacatcatgtcgatg
ctgtcagacatgggcatcaacgtcaccgaggccgacgatagcgaaggcgaggacgagaag
gacgacggtgacgacgagaccgacaacgagctcgtcgaggtcacgcagaaggccgtcacc
gaggtcaagaagtcggagcccggcgagcgcaccgacgatcccgtgcgcatgtatctgcgc
gagatgggcaccgtcgagttgctgtcgcgcgaaggcgaaatcgcgattgcaaaacgcatc
gaggccggccgcgaggcgatgatcgcgggcctctgcgaaagcccgctgaccttccaggcc
atcatcatctggcgcgatgagctcaacgaaggaaagatcttcctccgcgacatcatcgat
ctcgaagctacctatgccggaccggaatcgaagggcggcatcaatccgaacctgatcggc
aacaacggcgccgagggcaccgcggctgaaggcaatggcggcgatgcgcagggcagcgcg
ccggcccacgtcgcgccgccggcagcgccgccgtcgccgaccccgttccgcgccgcgccc
gccggtggcgaagccgccaccgaggagaaggatcccgccgaggccgccgccgaaggcgac
atggacgacgacgagttcgagaaccagatgtcgctcgccgccatcgaggccgagctgaag
ccgaaggtggtcgagaccttcgacaagatcgcgtccgagtacaagaagctgcgccgcctg
caggagcaggacatcgccaaccagctgcagagcgagtcgctgtcgccctcgcaggagcgc
aagtacaagaagctgaaggacgagatcatcgtcgaggtgaagtcgctgcgcctcaaccag
gcccgcatcgattcgctggtcgagcagctctacgacatcaacaagaagctggtctcgttc
gagggccgcctgctgcgcctcggcgacagtcacggcgtcgcgcgcgaggacttcctgcgc
aactaccagggctccgagctcgatccgcgctggctcaatcgcgtctccaagctgtcggcc
aagggctggaagaacttcgtccatcacgagaaggaccgcatcaaggacctgcgccacgag
atccagtcgctggcggcgctcaccgggctcgagatcggcgaattccgcaagatcgtgcac
ggcgtgcagaagggcgagcgcgaggcccgtcaggccaagaaggagatggtggaagccaac
ctccgtctcgtgatctcgatcgccaagaagtacaccaaccgcggcctgcagttcctcgac
ctgatccaggaaggcaatatcggcctgatgaaggcggtcgataagttcgaatatcgccgc
ggctacaagttctcgacctacgccacctggtggatccggcaggcgatcacccgctcgatc
gccgaccaggcccgcaccatccgcatccccgtgcacatgatcgagacgatcaacaagatc
gtccgcacctcgcgccagatgctgaacgagatcggccgcgagccgacccccgaagagctc
gccgagaagctcggcatgccgctcgagaaggtccgcaaggtcctcaagatcgccaaggag
ccgctgtcgctcgagacgcctgtgggcgatgaagaggattcgcatctcggcgatttcatc
gaggacaagaacgcgatcctgccgatcgacgccgcgatccagtccaacctgcgcgagacc
accacgcgcgtgctggcctcgctcaccccgcgcgaggagcgcgtgctgcgcatgcgcttc
ggcatcggcatgaacaccgaccacacgctggaagaagtcggccagcagttctcggtcacc
cgcgagcgcatccgccagatcgaggccaaggcgctgcgcaagctgaagcacccgtcgcgg
tcgcggaagctgcggagcttcctggacaactaa
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