Bradyrhizobium pachyrhizi: QA639_23880
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Entry
QA639_23880 CDS
T09303
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpah
Bradyrhizobium pachyrhizi
Pathway
bpah03030
DNA replication
bpah03430
Mismatch repair
bpah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QA639_23880 (dnaE)
03430 Mismatch repair
QA639_23880 (dnaE)
03440 Homologous recombination
QA639_23880 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpah03032
]
QA639_23880 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpah03400
]
QA639_23880 (dnaE)
Enzymes [BR:
bpah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QA639_23880 (dnaE)
DNA replication proteins [BR:
bpah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QA639_23880 (dnaE)
DNA repair and recombination proteins [BR:
bpah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QA639_23880 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
T2SSK
DUF6374
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WFU52734
LinkDB
All DBs
Position
complement(5084953..5088477)
Genome browser
AA seq
1174 aa
AA seq
DB search
MPNAGFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAGY
GIQPIVGCELAVDFGDVDPNTRSILATTGPARIVLLAARERGYRSLMRLNSRAFLETPVN
QTPHIKFDWLTDDAEDLIALTGGPDGPIALALRAEQAALAATRCERLAGLFGDRLYIELQ
RHGVDKERRTEAGLIDLAYSKGLPLVATNEPYFASNDDYESHDALLCIAGGHLIAETNRE
QLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPKTRKPILPFFTVGAASSVDAA
ADEAAELKRQAEEGLANRLRVHGLSPGMTEEDYAKRLAFELDVITRMKYAGYFLIVSDFI
KWAKAQGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFDIDFCQ
DRRGEVIQYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA
APVTLAQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELV
PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDLATLPI
DDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA
RKHGDEESEYLHPILEPILKETFGVIIYQEQVMQIAQQMAGYSLGQADLLRRAMGKKIRA
EMDKQRDIFVAGAMKNGVAKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMKAHY
PVEFLAASMTLELNNTDKLSEFRSEAQRLGIKVEAPNINRSGATFEVSDNTIYYALAALK
GVGIQAVEQIIAERKKGAFTSLADFAARVSPRAVNKRIIESLAAAGAFDTLEPNRARVFA
GADAILAACQRSHEAATSGQNDMFGSAPDAPSIMLPQVEPWLPADRLRREYDAIGFFLSG
HPLDDYATALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGIMGLSDP
TGHFEAVLFSEGLAQYRDVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDHAAAKTQKGL
RIFVRDTKPLDSIARRLNMPDAAPAPGGAAKAPAAKPVATAPPPVAGTDGDVSLVMMLDL
ETEVEMKLPGRYKVSPQIAGAIKAVVGVVDVQTL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgccgaatgccggattcgttcatcttcacgttcattccgcctattcgctgctgaagggc
tcgatcaagatcgccaagctgggcgagctcgcgaaggccgaccgccagcccgcgctggcg
ctgaccgataccgacaacatgttcggcgcgctggaattctccgacaagatggccggctac
ggcatccagccgatcgtcggctgcgagctggcggtggatttcggcgacgtcgatccgaat
acgcgcagcatccttgcgacgacgggcccggcgcgaatcgtgctgctggcggcgcgcgag
cgcggctaccgcagcctgatgcggctgaactcgcgggcgttcctggagacgccggtcaac
cagaccccgcacatcaagttcgattggctcaccgacgacgccgaggacctgatcgcgctg
accggcggccccgacgggccgatcgcgctggcgctgcgtgccgaacaggcggcattggcc
gcgacccgctgtgaacgtttggccggcctgttcggcgatcgcctctacatcgaattgcag
cgccacggcgtcgacaaggagcgccgcaccgaggccggcctgatcgatctcgcctacagc
aagggcctgccgctggttgcgaccaacgagccgtatttcgccagcaatgacgattacgaa
tcgcatgacgcgctgctgtgcatcgccggcggccatctgatcgccgagaccaatcgggag
cagctgacccccgatcaccgcttcaagacccgcgccgaaatggcggtgctgttcgccgat
attccggaggcgctggcctcgacggtcgagatcgccgagcgctgctcgttccggccgaag
acccgcaagccgatcctgccgttcttcaccgtcggtgccgcgtcgagcgtcgatgccgcc
gccgacgaggccgccgagctgaagcgccaggcggaggaggggctcgccaaccggctgcgg
gtgcatggtctctcgcccggcatgacggaagaggactacgccaagcgtctcgccttcgag
ctcgacgtcatcacccgcatgaaatatgcgggctacttcctgatcgtctccgacttcatc
aaatgggcgaaggcgcagggcattccggtcggaccgggccgcggctccggcgccggctcg
ctggtcgcatgggtgctcaccatcaccgacctcgacccgatgcgctttgcgctgctgttc
gagcgcttcctcaatcccgaacgcgtctcgatgccggacttcgacatcgacttctgccag
gaccgccgcggcgaggtgatccagtatgtgcaggagcgctacggccgcgaccaggtggcg
cagatcatcaccttcggtacgctgcaggcgcgcggtgtgctgcgcgacgtcgggcgcgtg
ctgcagatgccgtacggacaggtcgacaagctgaccaagcttgtgccgcagaatcccgca
gcccccgtcacgctggcgcaggcgatcgagggcgagccgaagctacaggcgttccgcgac
gaggatccggtggtggcgcgcgccttcgatatcgcgcagcgcctcgagggcctgacccgc
cacgcctcgacgcacgccgccggtatcgtgatcggcgaccggccgctcagcgagctggtg
ccgatgtatcgcgatccgaaatccgacatgccggtcacccagttcaacatgaaatgggtc
gagccggccggcctcgtgaagttcgacttcctcggcctcaagacgctgacggtgctcgat
gtcgcggtgaagttgctcaagcagcgcgacgtccatgtcgatctcgccacgctgccgatc
gacgatgcggcgagttaccagatgctggcgcggggcgatgtggtcggcgtgttccaggtg
gaaagccagggcatgcggcgcgcgctgatcgacatgcggccggaccgtttcgaggacatc
atcgcgctggtggcgctgtatcgcccgggcccgatggcgaacatcccgacctattgcgcg
cgcaagcacggcgacgaggaatcggaatatctgcatccgatcctggagccgatcctgaag
gagaccttcggcgtcatcatctatcaggaacaggtgatgcagatcgcacagcagatggcg
ggttactcgctcggccaggccgacctgctgcgtcgcgcgatgggcaagaagatccgcgcc
gagatggacaagcagcgcgacatcttcgtcgccggcgcgatgaagaacggcgtggcgaag
gggcaggcggaaaccatcttcgagctgctcgccaagttcgccgactacggcttcaacaag
agccacgcggcggcctatgcgctggtgtcgtaccacaccgcctatatgaaggcgcattat
ccggtcgagttcctcgcggcgtcgatgacgctcgaactcaacaacaccgacaagctgtcc
gaattccgctccgaggcgcagcggctcggcatcaaggtcgaggcgcccaacatcaatcgc
tcgggtgcgaccttcgaggtcagcgacaacacgatctattacgcgctcgctgcgctgaag
ggcgtcggcatccaggcggtcgagcagatcattgcggagcgcaagaagggcgccttcacc
tcgctcgccgattttgccgcgcgggtgagcccgcgcgccgtcaacaagcggatcatcgag
tcccttgcggcggccggcgccttcgacacgctggagcccaatcgcgcgcgcgtgttcgcc
ggcgccgatgcgatcctcgctgcctgccagcgcagtcatgaagccgcgacctcgggccag
aacgacatgttcggcagcgcgcccgacgcgcccagcatcatgctgccgcaggtcgagccg
tggctgcccgcggaccggctgcgacgcgaatatgacgcgatcggcttcttcctgtcgggc
catccgctcgacgactacgcgaccgcgctgaagcggcttcgcgtgcaatcctgggcggag
ttttcgcgcgcggtgaagacaggcgccacggcgggcaaggtcgcggcgacggtggtgtcg
cgcatggagcggcgcaccaagaccggcaacaagatgggcatcatgggcctgtcggaccca
accggccatttcgaggcggtgctgttctcggagggactcgcgcaataccgcgatgtgctc
gagccgggcgcggccgtgctgttgcagctcggcgccgagttgcagggcgaggacgtgcgg
gcgcgggtgctgcacgccgaaccgctcgatcacgccgcggccaagacgcaaaagggcctg
cgcatcttcgtgcgcgacaccaagccgctggattcgatcgcccgccggctcaacatgccg
gacgccgcgcccgcaccaggcggcgcggcaaaggcgccggcggcaaagccggtggcaaca
gcgccgccgccggtggcaggaaccgatggcgacgtttcgctggtcatgatgctcgacctc
gagaccgaggtggagatgaagctgcccggccgctacaaggtctcgccgcagatcgccggc
gcgatcaaggcggtcgtcggcgtggtcgacgtgcagacgctgtag
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