Bradyrhizobium pachyrhizi: QA639_26245
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Entry
QA639_26245 CDS
T09303
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpah
Bradyrhizobium pachyrhizi
Pathway
bpah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QA639_26245 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpah03021
]
QA639_26245 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpah03400
]
QA639_26245 (rpoC)
Enzymes [BR:
bpah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QA639_26245 (rpoC)
Transcription machinery [BR:
bpah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QA639_26245 (rpoC)
DNA repair and recombination proteins [BR:
bpah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QA639_26245 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_RND
RnfC_N
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WFU53171
LinkDB
All DBs
Position
complement(5540296..5544498)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLEATLRADMAETDSDIKHKKLAKRLKIVEAFRVSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
SKVIHLHTKIKYRWEGLDEEGKQSKRWIETTAGRVMLGNLLPKNPKISYDIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPASKWKIVDQTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKAGEEVAKAMMKEISSTKKTAAGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQTDCGTTLGIKMRAIVDAGTVVASLGSRILGRVA
CDDVRDPATNEVIIKRDTLMEESHVDAIQQAGIQEVKIRSALTCELINGICAKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIKNKAI
ARNSEGSLIAMVRNMVVAIVDADGTERATHRIQYGSKMHVDEGDMVKRGQRIAEWDPYTR
PVLTEVEGTIGFEDLVEGQSISETLDESTGIAKRVVIDWRTTRGGSDLRPAIVVKGKDGK
VLKLARGGDARYMLSVDGILSVDVGAKVMPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAETAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEV
TDQGDTDMISGEQVDKIEFDALNTKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMARIREVAVKRDKLILDEREKQ
QAAIVPTAPEAEPLALPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagagattatgaatcttttcaatccgacgaccccggcccaggtcttcgaccag
atccggatttcgatcgcgtctccggagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtgacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctggcggcgccggtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgctcgacatgacgctgaaggatctcgaacggatcctg
tactttgaatactacgtcgtgctcgagccgggtctcaccgcgctgaaggaccgtcagctg
ctgtcggaagacgagtacctgaaggcgcaggacgagtacggccaggattccttcaccgcc
atgatcggcgcggaggcgatccgcgagctgctgaaggggctcgagctcgagaagctcgag
gcgacgctgcgtgccgacatggcggagaccgactccgacatcaagcacaagaagctcgcc
aagcgtctgaagatcgtcgaggctttccgcgtttccggcaacaagccggaatggatgatc
atgacggtcgtgccggtgattccgccggacctgcgtccgctggtgccgctcgacggcggc
cggttcgcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgtgcgcccgacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcactgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgacgccaagggcctgtccaccacggtgaagcaggccaag
aagctggtcgagaaggagcgtccggaggtttgggatatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctgggcatccaggcattcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgccctgcat
tcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcctcgacgaggaa
ggcaagcagtccaagcgctggatcgaaaccaccgcgggccgcgtcatgctcggcaacctg
ctgccgaagaacccgaagatctcgtacgacatcatcaacaagctgatgaccaagcgcgag
atctccggcgtgatcgaccaggtctaccggcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggcgtcgaagtggaagatcgtcgatcagacccgtacgctg
gcgaaggatttcgagcagcagtacaatgacggcctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccggtgaagaagtcgccaaggcgatgatgaaggag
atctcgtccaccaagaagacggcggcgggcgcggatgccgacatcaactcgatctacatg
atggcgcactccggtgcgcgtggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatttccaacttcaag
gaaggtctgtcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgccgtctggtcgacgtcgcg
caggactgcatcatcacgcagaccgactgcggcaccacgctcggcatcaagatgcgcgcc
atcgtcgacgccggcacggtcgtcgcctcgctcggctcccgcatcctgggccgcgtggcc
tgcgatgacgtgcgcgatcccgccaccaacgaggtgatcatcaagcgtgacaccttgatg
gaggagagccatgtcgacgcgatccagcaggccggcatccaggaagtgaagatccgctcg
gcgctgacctgcgagctgatcaacggcatctgcgccaagtgctacggccgcgacctggcc
cgcggcaccccggtcaaccacggtgaggccgtcggcgtcatcgcggcgcagtcgatcggt
gagcccggcacgcagctgacgatgcgcacgttccacatcggcggcgccgcgcagctcaac
gagcagtcgttcgtggaatcgaacttcgacggcaagatcgtgatcaagaacaaggcgatt
gcccgcaacagcgaaggcagcctgatcgcgatggtgcgcaacatggtcgttgcgatcgtc
gatgccgacggcaccgagcgtgcaacccaccgtattcaatacggttcgaagatgcatgtc
gacgaaggcgacatggtcaagcgcggccagcgcatcgccgagtgggacccctatacccgc
ccggtcctcaccgaagtcgagggcacgatcgggttcgaggatctggtcgaaggccagtcg
atctcggaaacgctcgacgaatcgaccggtatcgccaagcgcgtggtcatcgactggcgc
acgacgcgcggcggttcggacctgcgtccggccatcgtggtcaagggcaaggacggcaag
gtgctgaagctcgcgcgtggcggcgatgcccgctacatgctgtcggtcgatggcattctg
tcggtcgacgtcggcgcgaaggtgatgcccggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggct
cgcaagccgaaggatgcggcgatcatcgcggagaccgcgggaacgatccgcttcggccgc
gactacaagaacaagcgccgcatctcgatcgagccgatggacaagaccgaggagccgcgc
gagtacctgatcccgaagggcaagcacatccacttgcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctaccggttgcagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtcgaggtc
accgatcagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctcaataccaaggccaaggaggagggcaagaagcccgccacgggtacgccggttctg
ctcggcatcaccaaggcgagcctgcagacccgctccttcttctcggcggcgtcgttccag
gagaccacgcgcgtgctcaccgaagctgccgtcaacggcaaggtggacccgctcgagggc
ctcaaggagaacgtcattgtcggccgcctgatcccggccggcaccggcgcctcgatggcg
cggatccgcgaagtcgcggtcaagcgcgacaagctgatcctcgacgagcgcgagaagcag
caggcggcgatcgtgccgacggctccggaagcggagccgctggcgctgccgcccgcggaa
tag
DBGET
integrated database retrieval system
