Bradyrhizobium pachyrhizi: QA639_38535
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Entry
QA639_38535 CDS
T09303
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpah
Bradyrhizobium pachyrhizi
Pathway
bpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QA639_38535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpah03019
]
QA639_38535
Enzymes [BR:
bpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QA639_38535
Messenger RNA biogenesis [BR:
bpah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QA639_38535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
DUF8086
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WFU55380
LinkDB
All DBs
Position
8159048..8160466
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AA seq
472 aa
AA seq
DB search
MTSFQDFGLADPIARALREENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI
LHRLLENRVRPQPKSCRVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMGRQVR
AVMQGVEVMVATPGRLLDLVQSNGLKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIR
RQTLFFSATMPKDIAELAEAMLRDPARVAVTPVASTVDRIAQRAIQVDFAAKPMVLAQLL
KQEPVNRALVFTRTKHGADKVVKSLAKAGIEANAIHGNKSQNHRERTLAAFRSGEIRTLV
ATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGVAISLIAGAEEMGYLRD
IERLIRITVPREDRRTQGGREAAAPAQATHPHRGGRSAPRAHNVRGNEAAPGAKGPRRRR
RRGGNNGAPQTSRGESPRPSQAGNSEGIQGVAFLHRESRPNPQSNRNNRPKH
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcctttcaggatttcggcctcgccgatcccatcgcccgcgcgctccgagaagag
aattatctcacgccgacccccatccaggcccagaccatcccgctagcccttgccggccgc
gacgtcgtcggcatcgcccagaccggtaccggcaagaccgcctccttcgcgctgccgatc
ctgcaccggctgctcgagaaccgcgtgcgcccgcagcccaagagctgccgcgtgctggta
ctctcgccgacccgcgagctgtccggacagatcctcgacagcttcaacacctatggccgc
cacatccggctgtcctcggcgctcgccatcggcggcgtgccgatgggccgccaggtccgt
gccgtgatgcagggcgtcgaggtgatggtcgccacccccggccgcctgctcgatctcgtg
cagagcaacggtctgaagctcaaccaggtcgagttcctggtgctcgatgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccggaaaatcgtcgccaagctgccgatccgg
cgccagacgctgttcttctcggccaccatgcccaaggacatcgccgagctcgccgaggcg
atgctgcgcgacccggcccgcgtggccgtgacgccggtggcctcgacggtggatcgcatc
gcccagcgcgcgatccaggtcgatttcgcggccaagccgatggtcctcgcccagctgctg
aagcaggaaccggtcaaccgcgccctggtcttcacccggaccaagcacggtgccgacaag
gtggtgaaaagccttgccaaggccggcatcgaggccaatgcgatccacggcaacaagtcg
cagaaccaccgcgagcgcacgctggcggcgttccgttccggcgagatccgcacgctggtg
gcgaccgatatcgccgcccgcggcatcgacgtcgacggcgtcagccacgtcgtgaatttc
gacctgcccaacatcccggagacctacgtccaccgcatcggccgcacggcgcgcgccggc
gccgacggcgtcgcgatctcgctgatcgccggtgccgaggagatgggctatctgcgcgat
atcgagcggctgatccggattaccgtgccgcgggaagaccgccgcacacagggcggccgc
gaggccgccgcgccggcgcaggccacccacccgcaccggggcggccgctccgcgccccgt
gcacataatgtccgtgggaatgaggccgctccgggcgcaaaaggccctcgccgccgccgc
cgtcgaggtggtaataatggcgcgccgcagacgagccggggcgagtcgccgcgtccgtcg
caggccggcaacagcgaaggcattcagggcgtcgccttcttgcatcgcgagagccggccg
aatccgcaatccaaccgcaacaaccgaccgaagcactag
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