Borrelia parkeri: X966_01915
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Entry
X966_01915 CDS
T03987
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpak
Borrelia parkeri
Pathway
bpak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X966_01915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpak03021
]
X966_01915
03400 DNA repair and recombination proteins [BR:
bpak03400
]
X966_01915
Enzymes [BR:
bpak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X966_01915
Transcription machinery [BR:
bpak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X966_01915
DNA repair and recombination proteins [BR:
bpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X966_01915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AHE62712
LinkDB
All DBs
Position
complement(397738..401871)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFEKIRIKIASPDQIRSWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSIRYKGIICDRCNVEVTHFKVRRERMGHIELSAPVAHIWYYKYIPSRIGLLLDI
TASNLNSILYYEKYIVIEPGDTDLKKMQLLNEDEYSEAKERYGMSFSASMGAEAIKTLLE
NLDLDELSSKLRLQMIDKDDKTDKKLLRRLEIIENFKVSGNKPEWMIMDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGTSNRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGIPAK
MALELFKPFVIRKLIESESVFNIKRAKSLIEQEVDEVWQILDNVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMERKNVVGEGRKFSNFNHVLLAINNKSLDYNARIYVK
VDGEYIETTAGCVVFNEALPGKISFVNKTLSDYELQNLISEVYVVYGSSIVIEMLDIIKE
LGFKYATKFGCTISMSDIIVPEEKKVYVDKANREIAKIQNDYTKGVITGEERYNNVVSVW
SKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVEALKHGEEIVEPLREKAVGSYSIERIKSPITGEIILDVNEEITEDKIKLLETVGI
DKLVIRSVLTCEAEHGVCQKCYGRDFSNNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKIALKNSFILNGLEGFNVQVDGGLLFTRKGTLRVINVIYEEDIKDIKEL
KVLDSQKVIKGMPLFTSKDGIDVLSSHIGYVKIKDNKLMIVSEEQEISLKTGTKLEVNVG
DYVEAGRVIGTFDPFAEPIIAEVRGKVKFKDIILGTTLKEEINLETGNIEKRITDQVFES
LDPRILIINDRGIEIASYVLPGDAYLQVEDGQDIDIGDIIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGVVQFKAIQKGKRLINVLDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVSVGDTNFVYNQKVDKHTFYEQNKRVIEQGGEPAVASPILIGITKASLNIDSFISA
ASFQETTKVLTDASIAGSVDDLKGLKENVVIGHLIPTGTGMNLYKRVKVRENSSSEM
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaaagataagaataaagatagcatctcctgatcaaatt
aggagttggtcttatggagaggttaaaaaatctgaaactattaactatagaactttgaga
cctgagaaagatggtcttttttgcgagagaatttttggaactactaaagaatgggaatgt
tattgtggaaagtttaagtcaataaggtataaaggtattatttgtgatcgttgtaatgtt
gaggtaactcattttaaagttagacgtgagagaatggggcatattgaactctcagctcct
gttgctcatatctggtattataaatatattccttctagaattggtcttttacttgatatt
acggcttctaatttaaactctattctttattatgaaaagtatatcgtaattgagccaggt
gatactgatcttaaaaagatgcaacttttaaatgaagatgaatattctgaagcaaaagag
agatatgggatgtcttttagtgcttcaatgggtgctgaggccattaaaactttacttgag
aaccttgatcttgatgaactttcatccaagcttagacttcagatgattgataaagatgat
aagacagataaaaaacttttaagacgtcttgagatcattgaaaattttaaagtttctgga
aataagccagaatggatgattatggatgttcttcctgttattcctccagaaattagaccg
atggttcagcttgatggtggaagatttgcaacttctgatctcaatgacctctatagaaga
gtaataaatagaaataataggttaagaaaacttttgcttcttaatgcacctgagattatt
gtcagaaatgaaaaaagaatgttacaagaatcagttgattctctttttgataattctcat
aagagaaaggttgtgaagggtacatccaatagacctcttaaatctctctctgatgcacta
aagggtaaacaaggtagatttaggcagaaccttcttggaaagagagttgattattcaggt
cgttctgtaattgttgtgggacctgaacttaagctacatcaatgtggtattcctgcaaag
atggcgcttgagctttttaaaccatttgtaattagaaaattgattgagagtgaatccgta
tttaacataaagcgagcaaagagtctaattgaacaagaagtagatgaagtatggcagatt
ttagacaatgttattaaagagcatcctgtgcttttaaaccgcgccccaacacttcacagg
ctgggaatacaagcttttgaaccagtgttagttgaaggaaaggcaattaaattacatcct
cttgtttgtcatgcatataatgctgactttgatggtgatcagatggctgtacatgttcct
ttaacacctgcagcacaggctgaaagttgggctttgatgttgtcaactaataatttgtta
aatcctgcaaacggacaccctattgtattcccatctcaagatattgtattaggtctttat
tacttaactatggagaggaaaaatgtcgtgggagaagggcgtaagttctctaattttaat
catgttcttcttgcgattaataataaaagtctagactataatgcacggatttatgtaaag
gttgatggtgagtatatagaaactacggcaggatgtgttgtatttaacgaggctttacca
gggaagatttcatttgtaaataaaacccttagtgattatgaattacagaatttgatttct
gaagtttatgttgtgtatggttcctctattgtaattgagatgttggatattattaaggag
cttgggtttaaatatgctactaaatttggatgtacaataagtatgagcgatattattgtg
cctgaagaaaagaaagtatatgtggataaggctaatagagaaattgcaaaaattcagaat
gattatactaaaggtgttattactggagaagagagatacaacaatgttgtttctgtttgg
tcaaagacaaatgaagagcttacgaataagatgatggaaattcttaaaaaagatagagat
ggatttaatgtgatttatatgatggcagattctggtgctcgtggaagtagaaatcagata
agacagcttgcgggaatgagaggattgatggctaaaacttctggagatattattgaactt
ccaattatttctaattttaaagaagggctttctgttatagagttctttatctctacaaat
ggtgcaagaaagggacttgcagatacagctcttaagacagcggatgccgggtatttaacg
cgaagattggtagatattgctcaagatgttgttgttagaatagaagattgtggaactatt
aatggtataaaagttgaggctttaaagcatggtgaagaaatagttgagcctttaagagaa
aaagccgttggtagttattcaattgagagaataaaaagtcctattacgggcgagattatt
ttagatgtaaatgaagaaattacagaggataagataaagttattggaaaccgttggtatt
gacaagcttgtaattagatctgttttgacttgcgaagctgagcatggagtttgtcagaaa
tgttatggacgtgacttttcaaataataagcctgttaatattggagaggctgttgggata
atagcagctcagtcaataggtcagccaggaacacagcttaccatgagaacttttcacatt
gggggagttgcacaggctggtagtgaagatgataagattgcgcttaaaaactctttcatt
cttaatggactagagggatttaatgtgcaagttgatggcggattgctttttacaagaaaa
ggaactttaagagtaataaatgttatttatgaagaagatattaaggatattaaagaactt
aaggtattagattctcaaaaggtaattaagggaatgcctttgtttacaagcaaggatggt
attgatgtattatcatctcatattggttatgttaaaattaaagataacaagctgatgatt
gtctctgaagagcaagagatatctctaaagactggtacgaaacttgaggtaaatgttggt
gattatgttgaggccgggcgtgtaattggaacatttgatccatttgcggaaccaattatt
gctgaagtaaggggaaaagttaaatttaaagatattattttaggaacaactcttaaagaa
gaaataaaccttgaaacgggaaatattgaaaagagaattacggatcaagtttttgagtct
cttgatcctaggattttaattattaatgatagaggaattgagattgcttcctatgttctt
cctggggatgcttatctgcaagttgaggatggacaagacattgatataggggatatcatt
gctaaactttccaaaggttctgaaaaaactcaagatattactggtggtcttcctagagtt
aatgatttatttgaaacaagaattccaaaaaatttgactgagatggctaaggtaagtgga
gttgttcagtttaaagcgattcaaaaaggtaaaagactcattaatgttttagatgagtat
ggagttgagcataagcattatattcctgctgggaaacatcttttagttagggatggagac
gttgttaaggctggagatatgctttgtgatggaagaattaatcctcatgatgttcttgaa
atccttggtggaattagtttgcaagaatttttattggcagaaattcaggatgtttatagg
aagcagggtgtaagtattaatgataagcatattggtgtgatcattaaacagatgatgaag
aaagttaagattgtatctgtaggtgatactaattttgtttataatcaaaaggtagataag
catactttttatgagcaaaataaaagggtaattgaacagggtggtgagcctgcagtagct
agtccaatccttattgggataacaaaggcatctcttaatatcgattcatttatttcagct
gcttctttccaagaaacaactaaagtgttaacagatgcttcaattgcaggtagtgtcgat
gatcttaaaggtcttaaggagaatgttgtgattggacatttaattcctaccggaacaggt
atgaatttgtataaaagagttaaggtgagggaaaattcaagctctgaaatgtag
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