Borrelia parkeri: X966_03165
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Entry
X966_03165 CDS
T03987
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpak
Borrelia parkeri
Pathway
bpak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X966_03165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpak03400
]
X966_03165
Enzymes [BR:
bpak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X966_03165
DNA repair and recombination proteins [BR:
bpak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
X966_03165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
UB2H
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHE62936
LinkDB
All DBs
Position
complement(654624..657992)
Genome browser
AA seq
1122 aa
AA seq
DB search
MNIEKELTTRLNDNQNLKKIQQLIKKNLPFTIVGHEGFFKAFLINKIKEYSSSNKIILIV
KNESISDELKDDLIQITDNIYELNYFSPLIYKDISSKSKIFIKRVKFLINFYENNPGIYI
VSLKSLLSKIPTKENLFKNIYKIQTGTIINIENLESKLIKLGYEKTMRVTLPGEFTIKSE
IIDIHSFNKTEPIRISVEVDKIKEIKYFNSLTQLKKGTPIFEFDIIPKKEIIWNDENINK
LKHHLKENEYKKLFEQIETKYNARAEEIFYPLIGDTYLNQEINKDTPIINLEIPNLQEEI
KKIYKEYEKLYSQAIESGKKTIAPKEIFINLSDLKLKTNIFIVKTPANIKTKELIEFNIE
SDRKFFSNITLAKEEIQNWLNNGFKVIIAAESNSQKEKLKYIFKDLTKIKIEVLKISSSL
IINKEKIAIILESDIFNRRQKTNKAFESSKTKTIDSFIEVEKNSYVVHINHGIGIFRQIK
RIKTSLLEKDYIEIEYADNEKLFIPIEQTHLIQRYIGNETQNIKLDKISSKTWEKKKAYA
KKRIDAIADKLVELYVKRESTKGFQYPQDNEWQLLFESEFPYDETPDQLTAISEIKQDMM
SLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVSILSPTTILTEQHFNTFKQRFKNFP
INIAMLSRFIKKSKERDIIKKLETGEIDIIIGTHKILSKKIIYKNLGLIIIDEEQRFGVK
EKEKLKEIKISVDCLALSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVEEFNELL
IKHAIENELSRDGQVFFVHHNIQELDLIKAMLEKMVPYARIATIHARLQGDQIENIMHDF
INKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLYQLKGRVGRSSQKAFAYFLYK
ENSSLNESAIERLRAISEFSELGTGFQIAMKDMEIRGVGNLLGREQHGEIEFIGLDYYLT
MLNKAIEKRMGKNSKEDEITIEINYNGFIPDSYINNEQDKISIYKKISRVQNEEENNKIR
TEIYDQFGPIPKELNNLLILSELKLLAKKLNITSLKEKNELLEIEYLNTKSIPAEKIMQI
IKDNPTILKINPEYKNSVFLNLKHIKESEKINCIYKNLNLLL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaaaagaattaactaccagattaaatgacaatcaaaatctaaaaaaaata
caacaacttattaaaaaaaatctaccctttacaatagtaggacatgaaggattttttaaa
gctttcctaatcaacaaaataaaagaatacagcagtagtaataaaattatattaatagtt
aaaaacgaaagtatatcagatgaactcaaagatgatttaatacaaattacagataacata
tatgaacttaactatttcagtccccttatatataaagatatcagttcaaaaagtaaaatt
tttataaaacgagtaaaatttttaatcaatttttatgaaaataatcctgggatctacatt
gtttcactaaaatccctacttagcaaaatccctacaaaagaaaatttatttaaaaacatt
tataaaattcagacaggcacgataataaacatagaaaatcttgaaagtaaacttataaaa
ctaggatatgaaaaaacaatgagggttacattacctggagaatttacaataaagagtgaa
ataatagacatacactcatttaataaaacagaaccaataagaatttcagtggaggttgat
aaaataaaagaaatcaaatattttaattccttaactcaattaaaaaaaggaactccaatt
tttgaatttgatataattcccaaaaaggaaatcatttggaatgatgaaaacataaataaa
ctaaaacaccacttaaaagaaaatgaatataaaaaattatttgaacaaattgaaacaaaa
tataatgcaagagcagaagaaatattttatccactaataggagacacatacctaaaccaa
gaaataaataaagatacacctattataaatttagaaataccaaatttacaagaagagatc
aaaaagatctataaagagtatgaaaaactttatagccaagcaatagagtctggaaaaaaa
acaattgcaccaaaagaaattttcataaatttgagcgatttaaaattaaaaactaacatt
tttattgtgaaaacccctgcaaatataaaaacaaaagaactaatagaatttaatatcgaa
agtgatcgtaaatttttctcaaatatcacacttgcaaaagaagaaatacaaaactggcta
aacaatggatttaaagtaatcattgcagcagaatctaattcacaaaaagaaaaattaaaa
tatatcttcaaagatctgacaaaaatcaaaattgaagttttaaaaatatcaagctcactt
ataataaacaaagaaaaaatagccattatccttgaatcagatatctttaatagaagacaa
aaaacaaataaagctttcgaatcatcaaaaactaaaactattgattcatttattgaagtg
gaaaaaaacagttatgttgttcacataaaccatggaattggaatatttcggcagataaaa
agaattaaaacgagtcttcttgaaaaagactacattgaaattgaatacgcagataacgaa
aaattatttattccaattgaacaaacacatcttattcaaagatatattggaaatgaaact
caaaatataaaattagataaaatcagctcaaaaacctgggaaaagaaaaaagcttatgca
aaaaaaagaatcgatgcaattgctgataaacttgttgaactttacgtgaaaagagaaagt
actaagggatttcaatatcctcaagacaatgaatggcaattattatttgaatcagaattt
ccatacgatgaaactcctgatcaattaacagcaatatcagaaatcaaacaagatatgatg
agtttaaaagtaatggatagacttttatgcggagatgttggctttggtaaaactgaagtc
gcaatgagggctgcattcaaagctgtcatgggcaaaaaacaggtatcaatactctctcca
acaacaattcttacagaacaacactttaatacatttaaacaaagatttaaaaactttcca
atcaacattgcaatgctgagcagatttataaaaaaatcaaaagaaagagacattataaaa
aaactagaaacaggagaaattgacataataattggaacacataaaatactctctaagaaa
ataatatataaaaacttaggactcattataattgatgaagaacaaagattcggggtaaaa
gaaaaagaaaaactaaaggaaataaaaatctctgttgattgtcttgccctatcagcaact
ccaataccaagatcccttcatatgtcattaatcaaattaagagacatttctgtcttaaaa
actccaccccaaaacagaataaaaatagaaacttatgtagaagaatttaacgagctactg
attaaacacgcaatagaaaatgaactttctcgagatggacaagttttttttgtacatcac
aatattcaagaactagatttaataaaagcaatgctagaaaaaatggttccttatgcaaga
attgcaaccatccatgcaagacttcaaggggaccaaattgaaaatattatgcatgatttt
ataaataaatcatatcaagtattactagcaacaacaatcattgaaaatggaatagatatt
gaaaatgcaaatacaataataattaacaatgcgaatagattcggacttgcacaattatac
cagctaaagggcagagttggaagaagttcacagaaagccttcgcttatttcttatataaa
gaaaattcaagcttaaacgaaagtgcaattgaaagactaagggcaatatctgaattttca
gaacttggaacaggatttcaaattgcaatgaaagatatggaaataagaggtgttggaaac
ttacttggacgcgaacaacatggagagatcgaatttattggactagattactacttaaca
atgttaaacaaagcaattgaaaaacgaatgggaaaaaattctaaggaagacgaaatcact
attgaaatcaattacaatggattcatccccgatagctatataaataatgaacaagacaaa
atatcaatttataaaaaaatctcaagggttcaaaacgaggaagaaaataacaaaataagg
actgaaatttatgaccaatttggaccaatcccaaaagaacttaataacttacttatatta
tcagaactcaaattacttgcaaaaaaactcaatattaccagccttaaagaaaaaaatgag
ttacttgaaatcgaatatttaaacacaaaaagtattcctgccgaaaaaataatgcaaatc
ataaaagacaatcctactatactgaaaataaatccagaatataaaaattccgttttctta
aacctaaaacatattaaagaatcagaaaaaataaactgcatatataaaaatttgaatcta
ttattataa
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