Bacillus paramobilis: AABL52_12440
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Entry
AABL52_12440 CDS
T11451
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bpam Bacillus paramobilis
Brite
KEGG Orthology (KO) [BR:
bpam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpam03016
]
AABL52_12440
Enzymes [BR:
bpam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AABL52_12440
Transfer RNA biogenesis [BR:
bpam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AABL52_12440
Prokaryotic type
tRNA splicing ligases
AABL52_12440
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6922
Motif
Other DBs
NCBI-ProteinID:
WZF33117
UniProt:
A0ABZ2VVH5
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All DBs
Position
2409946..2411133
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AA seq
395 aa
AA seq
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MLKLHGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
QDKIVPNLVGVDIGCGMEVVVIDKKKEEINFDCLDETIRKFVPSGFRIRDKEHRFSKMID
FDSVKAPYTLQRAQKSIGTLGGGNHFIELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
YEQLIDVTSMKDEIIKRLIDEGRAKEIQETLRGIHKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDMENMILRKGAISAQKGERVIIPIN
MRAGSIIAFGKGNPDWNFSGPHGAGRIMSRKKAKELLSLEDFQNTMTEVWTTSVAESTID
EAPMVYKPMDEIIENTKETIDIKRIIKPLYNFKAN
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaattacatggaaaatacaatgaagcgaaagtatttacgaataacgttgatgag
actgcgactgggcagattattgatctttgtaaccaagaattcgtaaaggatagtcaaatc
cgtattatgccagatacacatgcaggagcaggttgtacgattgggacaacaatgacaata
caagataaaattgttcctaatcttgtaggggtagacattgggtgtggaatggaagttgtt
gtgattgataagaaaaaagaagaaattaatttcgattgtttagacgaaacaattcgtaaa
tttgttccaagtggttttcgtatccgagataaagaacatcgattctcaaaaatgattgat
tttgatagtgtgaaggcgccatatacattacagcgggctcaaaaaagtataggtactctt
ggaggaggaaatcatttcattgaattaaatgaagatgataaagggaatgtatatattgtc
attcatagtggttctcgtaatttaggtaaacaaatagcagaatattaccaaaacttcgca
tatgaacaactaattgatgttacatcaatgaaagatgagattattaaaagattaattgat
gaggggagagcaaaagaaatacaagaaactttacgtggaattcataagcctaagattcgt
aaagaactagcttatttagaagggcaaggattcaaagattatatgaatgacatgaatatt
gcccaaaagtatgctgcgttaaatcgtaaagcaatgattgatgaaattgttacgaaaatg
gactggaaaataacggatcaattcactacaatacataactatattgacatggaaaatatg
attctacgaaaaggtgctatttcagctcagaaaggtgaacgagtaattattcctattaac
atgagagctggttcaattattgcatttggtaaaggtaatccagactggaacttttctggt
ccgcacggggcaggacgtattatgagtcgtaagaaggctaaagaattattgagtctagag
gacttccaaaatacgatgacagaggtttggactacatcggtagcagagagcacaattgat
gaggcaccaatggtttacaagccaatggatgaaattatagaaaatacgaaagaaacaata
gatataaagcgcattattaagccattatataattttaaagcgaattag
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