Bordetella parapertussis Bpp5: BN117_2913
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Entry
BN117_2913 CDS
T02297
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor 70
KO
K03086
RNA polymerase primary sigma factor
Organism
bpar
Bordetella parapertussis Bpp5
Pathway
bpar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN117_2913 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpar03021
]
BN117_2913 (rpoD)
Transcription machinery [BR:
bpar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN117_2913 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
MitMem_reg
Tea_C
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CCJ50246
UniProt:
K0MK25
LinkDB
All DBs
Position
complement(3135168..3137336)
Genome browser
AA seq
722 aa
AA seq
DB search
MKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRR
PGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEAR
RNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETL
LMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAK
RIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTA
DEDEADDGPAGGMSSKQLEDLRVRALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDII
QTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETN
LQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKA
RKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPED
KIRKILKIAKEPISMETPISDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLT
PREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE
GQ
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggtcgccaagcccgctgccaagacggccgccaagaagacggccaccaagacggtc
gcggccaagacggctgccgccgacaagccggccaagaccaccaaggcgcgcgccaagaag
gccgaagacaagctggccgacctggtcggcgccgcgcgtccggcgcccagcggccgccgt
cccggccgccccgcgaagaacgccaacaacgatagcgatgctttcgacgactccatggac
ggcgaaggcgaagtgctgcccgacctgaagccgcccaagcgcggcggcaagcgcggcaag
gccgatcccaaggatctgatcgcccgtggccccgtctcgcccgaagaatacgaagcgcgc
cgcaatcgcctcaagcagctgatcaagctgggcaaggaccgcggctacctgacctacggc
gaaatcaacgaccacctgcccgacgacctggtcgacgccgaagcgatcgacggcatcatc
agcaccttcagcgacatggggatcgcggtctatgaccaggcccccgacgccgaaaccctg
ctgatgagcgagaacgcgccggttgcctccaacgacgacgatgtcgaggacgaggccgag
gccgccctcaccaccgtggactccgacttcggccggaccaccgaccccgtgcgcatgtac
atgcgcgaaatgggctcggtcgagctgctcacgcgcgaaggcgaaatcgaaatcgccaag
cggatcgaggacggcctcaagcacatggtgatggccatctcggcttgtcccaccaccatc
aacgaaatcctcgcccacatcacgcgcgtgcgtgaaggccaggcccagatcgacgaagtg
gtcgatggcctggtcgaccccgaagacggcgaggaatacgccggcgccggcgtgaccgcc
gacgaggacgaagccgatgacggcccggccggcggcatgtccagcaagcagctggaagac
ctgcgcgtcagggccctggccaagttcgacgaggtgagcaagcagttcgagaagatgcgc
cagtcctatgagaaggaaggctataagtcggacgcctatctcaaggcccaggacatcatc
cagaccgaactcatgggcatccgcttcacggccaagatggtcgagaagctggccgatacc
ctgcgcgcccaggtcgaggaagtacgccagctcgaacgcgcggtgctgcatacctgcgtc
gaccgcgccggcatgccccgctcgcacttcctcaaggcctttcccggcaacgagaccaac
ctgcagtgggtgctggacgaagtcgccgccgcccatgcctacagcgaaaccctcgaacgc
cagatcccggccgtacaggaactgcagcaaaagctgatcgacctgcagacgcgcgtcgtg
ctgccgctgaaggacctcaaggacgtcaacaagcgcatggccaccggcgaagccaaggcc
cgcaaggccaagcgcgaaatgaccgaggccaacctgcgcctggtgatctccatcgccaag
aagtacaccaaccgtggcctgcagttcctggacctgatccaggaaggcaacatcggcctg
atgaaggcggtggacaagttcgaataccggcgcggctacaagttctcgacctacgccacg
tggtggatccgccaggccattacgcgctccatcgccgaccaggcgcgcaccatccggatt
ccggtccacatgatcgaaacgatcaacaagatgaaccggatcagccgtcagatcctgcag
gaaaccggcgccgagccggatcccgcgaccctggcgcagaagatggacatgcccgaggac
aagatccgcaagatcctgaagatcgccaaggagccgatctccatggaaacgcccatcagt
gacgacgacgactcgcacctgggcgatttcatcgaagacaccgccaccctggcgccttcc
gacgcggcgctgcacggctcgatgcgcgatgtggtcaaagaagtgttagactcgctcacc
ccgcgcgaggccaaggtgctgcgcatgcgtttcggcatcgaaatgagcaccgaccagacg
ctggaagaggtgggcaagcagtttgacgtcacgcgcgagcgcatccgtcaaatagaggcc
aaagcgctgcgcaagctgcgccaccccagccgcgccgacaagctgaagagcttcctcgaa
gggcagtaa
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