Bombus pascuorum (common carder bee): 132905156
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Entry
132905156 CDS
T09597
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132905156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132905156
03041 Spliceosome [BR:
bpas03041
]
132905156
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132905156
Spliceosome [BR:
bpas03041
]
Complex B
Other components
Prp19-related factors
132905156
Complex C
132905156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
TPR_10
RPN7
DHR-2_Lobe_A
PPR
Microp_apicomplexa_6
4HB_MCP_1
Motif
Other DBs
NCBI-GeneID:
132905156
NCBI-ProteinID:
XP_060812146
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All DBs
Position
3:8722537..8727317
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AA seq
839 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSPSDIPADAMRLLDSKTQDNITTYKDSIKFVRG
AIEKDGKAESQINNPDEIDIDIDDVDDTEADVEEDIPVEKQTIPSQVFGSLKTTDGEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagatccagaaggaaatctatatgtttttaatgaagaagatttacca
tacgaagaagaaattttgagaaatccttattctgtgaaacattggcaacgttatatagat
catttaaaaagtacaaaaagcagtaatttaaacattgtgtatgaacgagcgttaaaggaa
cttcctggaagctataagttatggtacaattatctacgtcaacgtgtcaaccaattgaaa
gggaggtgcataacagatccgctttatgaagatgtgaataatgcatttgagcgtgctttg
gtttttatgcataaaatgcccagaatttggatggactattgcacattgatgacagaacaa
tgttacattacacgtactcgtcaagtttttgatcgagcacttagagctctccctatcacg
caacatcatcgtatatggccattgtatattgaatttttaaaaaagcataatgtctatgaa
actgcagtcagagtttttagaaggtatcttaagctagctccagaagatacagaagaatat
atagaatacctgatatcaatcggaaggcttgacgaagcagctgtgaaacttgcacaaatt
gttaatcaagatgattttgtatcaaagcatggaaagtctaatcatcaattatggaatgaa
ttgtgcgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgcaatt
attagaggcggtttaagacgttatactgatcagttaggccctctttggaattctttggcg
gattattatgttcgtagcggtttattcgaaagggcgagggatatttatgaagaagcaata
caaacagtgactactgttagagattttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagcaaacgtatggaagaagctgcaaaaaatcctactgaagatgatgat
atagatctagaattgagattagcacgatttgaacatttaatggaaaggcgtttattactt
ctgaattctgtattactcagacaaaatcctcataatgtacaagaatggcataaaagagtt
aggctttatgagggacaaccacacgagattattaatacatatacagaagctgtacagact
gtacaaccacaattagcagtaggtaaattgcatactttgtgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagacgctagagtagttttcgagaaagcaactcatgtt
ccctatactaaagtcgatgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
agacatggaaattataaagaagcgttaaaacttatgcatcgtgctactgctatgccattt
cgtaaggtagcttaccatgacgagacagaaacagttcaaatgagattatataaatcttta
aaagtttggtctatgtatgccgatttagaagaaagttttgggactttcaagacatgcaaa
gctgtgtacgacaaaattatagatctaaaaatcgccacgccgcaaatcattattaattat
ggactctttctcgaagaaaatagatattttgaagaagctttcagagcttatgaaaaaggt
attgcactcttcaaatggcctaacgtttacgatatatggaatacgtatcttacaaaattt
ttaaaacgttacggtggaacaaagttagaacgaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgccaaagccttgtatttactgtatgcaaaattagaagaa
gaacatggtttggctaggcatgcaatgtctgtatatgaacgagcaactaacgctgttctt
cctgaagaaaaatttgagatgttcaacatatatattaaaaaagcagcagacatatatggt
gtcccaaaaacgaggcagatatatgaaaaagctatcgaagtacttaatgaagataatacg
agagaaatgtgtttacgcttcgcagaaatggagacgaaattaggagaagttgacagagct
cgggcaatatatgcgcactgtagtcaaatttgcgatccaagggtggcttcaaatttctgg
caaatatggaaagagtttgaagtgagacatggtaatgaagacactatgcgtgaaatgctt
cgaattaaacgtagtgtacaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttaaataatacatcaaactcaccatctgatataccagcagatgcaatgcgtcttttg
gatagtaaaacacaggataatattaccacatataaggacagtattaaatttgttcgtggt
gcgatagaaaaagatggtaaagcagaatctcaaataaacaatccggatgaaatagatatt
gatattgatgacgttgatgacactgaagcggatgtagaggaagacatacctgttgagaaa
caaactattccatcacaagtatttggtagtttaaagacaactgatggtgaagatgattaa
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