Bombus pascuorum (common carder bee): 132905232
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Entry
132905232 CDS
T09597
Name
(RefSeq) uncharacterized protein LOC132905232
KO
K03679
exosome complex component RRP4
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132905232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132905232
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132905232
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
132905232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
EF-hand_1
KH_6
ECR1_N
EF-hand_7
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_4
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
132905232
NCBI-ProteinID:
XP_060812303
LinkDB
All DBs
Position
3:complement(607259..610040)
Genome browser
AA seq
621 aa
AA seq
DB search
MMEEYPPINVRLAVNRVDLNIIKNEDIQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRA
SVAGVLEKVNKLISIRPLKARYQGEIGDVVVGRITEVQQKRWKVDTNSKLDSVLLLSSVN
LPGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKV
SPALIKRKKTHFHNLANGASLILGNNGYIWIGASKKDTDRSEGGFTQDLSRIPQANREVC
ARLRNCILILAQCNIQLTDTSVTYAYEESMKYKVNELLEPESHQRNMDACFTAFDKDGDG
YLSITEFEFICRALFRNDRGKIYNVDENQLKEMYSIFDLNGDGKIDREEFEICWNRWIKT
CTRPKSAFLIVDVQNDFITGSLNIKQCAAQHDGSEVIEPINRLLEIVQFDAVFYSLDWHP
MDHVSFIDNLHLRDVDPSSGISKEAAQVYDTITFRGPPLLKQRLWPRHCIQDSWGAELHK
DLKIVDNAIKIYKGTNPEVDSYSVFWDNKKMMETSLSSQLQEKGATDIYICGLAYDVCVG
ATAVDALTNGYRTILIDDCSRGVDLVDIEKTKATVIADNGVIVNSSQVKAMVEGKDRRPE
LGYKLALEIKRKSNFVDDDNQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatatccacctattaatgtacgtttggcagtaaatagagtcgatttaaat
ataataaagaatgaagacatacaacctcgaatatacacaccaggagaggagatttctagt
cagcctgactttttaagagggcatgggacatacgtggatgatgaaaacacattacgcgca
tctgtagctggcgttttagaaaaagtaaataaacttatttcgataagacctttgaaagca
cgttatcagggtgaaataggagatgtagttgttggtcgtataaccgaggtacaacagaag
cgatggaaagttgacacaaattccaaacttgattctgtattattgctgtctagtgttaat
ttacctggtggtgaactgaggagaagatctgcagaagacgaacaaactatgagaaggtat
ctccaggaaggagatttaatttgtgcagaagtacaaagtacttttgtagacggttcactc
tcattgcacactagggtcttaaagtatggtaaattgtctcagggtataatgttgaaagta
tcaccagctcttataaaaagaaagaaaacccattttcataatttagcgaatggtgcaagt
ctaatattaggaaataatggttacatatggattggagctagtaagaaagatactgataga
tcggaaggtggtttcacgcaggatttgtcaaggattcctcaagcgaaccgcgaagtttgt
gcacgattacgtaattgtattttaatcttagcgcaatgtaatatccaacttacagataca
tctgttacatacgcttatgaagaatctatgaaatataaagtaaacgaattgctggaacca
gagtcacatcaaaggaacatggatgcatgttttactgcatttgataaagatggagatgga
tatttgtcgattacggaatttgaattcatttgtcgtgcattatttcgtaatgatcgtggg
aaaatttataacgtcgatgaaaatcaattgaaggaaatgtattctatatttgacttgaac
ggagatggaaaaattgacagagaagaatttgagatatgctggaatcgatggattaagaca
tgcactcgtccaaagagcgcctttttaattgtggatgtacaaaacgatttcataacaggt
tctctaaatattaagcaatgtgctgcccagcatgatggttcagaagtaattgaaccaatt
aatcgtttattagagattgtacaattcgatgcagtgttttattctcttgattggcaccct
atggatcacgtatcttttattgataatttacatctaagagatgttgaccctagtagcgga
atctcaaaagaagcagcacaagtttatgatactataacattcagaggtccgccattgtta
aagcaacgactttggccgcgtcattgcattcaagactcttggggtgctgaacttcataaa
gatctgaaaattgtggacaatgcaattaagatatacaaaggaacgaatccagaagtagac
tcatattccgttttttgggataataaaaaaatgatggaaacaagtctatcttcacaatta
caagaaaagggcgcgacagatatatatatctgcggattagcctatgatgtctgcgtcggg
gctactgcagtagatgcacttacaaacggttatcggactattctcatcgatgactgtagc
cgaggagtagaccttgttgacattgaaaaaactaaagctactgttatagctgataatggc
gtaattgtaaattcaagtcaagtgaaagcaatggtcgaaggaaaagatcgccgaccagaa
cttggatataaattagctttagaaattaaacgaaaatcaaattttgtagatgatgataat
caatag
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