KEGG   Bombus pascuorum (common carder bee): 132905581
Entry
132905581         CDS       T09597                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
bpas  Bombus pascuorum (common carder bee)
Pathway
bpas03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:bpas00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    132905581
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpas03019]
    132905581
   03041 Spliceosome [BR:bpas03041]
    132905581
Messenger RNA biogenesis [BR:bpas03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     132905581
Spliceosome [BR:bpas03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    132905581
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd NBCH_WD40 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st EIF3I Nucleoporin_N Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_Vps41 WD40_like Beta-prop_EIPR1 WDR54 WDR90_beta-prop_4th Beta-prop_IFT140_2nd Cyto_heme_lyase
Other DBs
NCBI-GeneID: 132905581
NCBI-ProteinID: XP_060813038
LinkDB
Position
3:4332589..4334214
AA seq 332 aa
MMSGTIDQKLFYNTVLSQAFSPDGNYLLAGNIYGDISVFELLKALGPHKVEENELQGPNY
HFTAHPDQQVESMVSTDNFLVTGTSGEISGWDWKIVTSSKGQKSKVSWTIQLPVNKDSYE
KPDVNYLVYSKSNNILYAGCGDNNIYVITLEDGRILRSLEGHTDYIHCLSLMGNQLASCG
EDGTVRLWDLRKRENTNILTPHLVDKVARPRFGKWIGAIDFTEDWLLCGGGPSLSLWHMR
TMEATTVFDLPDEGIHVANIYEERVIAAGTAPHVYHLTYQGETLAKVPTSSNTVYSIVYQ
ENPQKVFSIAGSSNNIDICTNFNYRELMLKFA
NT seq 999 nt   +upstreamnt  +downstreamnt
atgatgtcgggtacaattgatcaaaaattattttataacactgtattgtcacaagctttc
tccccagatggaaattatttattggctggaaatatttacggagatatttcagtttttgag
ttattgaaagctttaggaccgcataaagtcgaagaaaatgaattacaaggccccaattat
catttcactgcacatcccgatcaacaagtggaaagtatggtttcaacagacaatttctta
gtaacaggaacatcaggagaaataagtggatgggattggaaaatagttacttcgagtaaa
ggtcaaaaaagcaaagtatcatggaccatacaacttccagttaataaggacagttacgaa
aaaccagatgtaaattatttagtatattcaaaatcaaataacattttgtatgctggttgt
ggtgataataatatttatgtaattactttagaagatggtagaatattaagaagcttagaa
ggacatacagactatattcattgcctatccttgatgggtaatcagttagcttcatgcggt
gaagatggaacagtaaggttgtgggatttacgaaaaagagaaaacaccaatatattaact
cctcatttagtagacaaagttgccagaccaagatttggaaaatggattggcgccatagac
ttcacggaagattggctgctatgtggtggtggtccaagtttatctttatggcatatgcgt
acgatggaagcaactactgtattcgaccttccggacgaaggcatccacgtggcaaacatc
tacgaagagcgtgtaatagctgctgggacggcacctcacgtttaccatctaacttatcaa
ggagaaactttagctaaagtgccaacttccagcaataccgtatatagtattgtatatcag
gaaaatccacaaaaagtgttcagcatagccggttcctcgaacaacatagacatctgtacg
aacttcaattaccgcgagttaatgttaaagtttgcttaa

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