Bombus pascuorum (common carder bee): 132905780
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Entry
132905780 CDS
T09597
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03013
Nucleocytoplasmic transport
bpas03015
mRNA surveillance pathway
bpas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132905780
09122 Translation
03013 Nucleocytoplasmic transport
132905780
03015 mRNA surveillance pathway
132905780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132905780
03041 Spliceosome [BR:
bpas03041
]
132905780
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132905780
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132905780
Spliceosome [BR:
bpas03041
]
Complex C
Other components
EJC/TREX
132905780
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132905780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132905780
NCBI-ProteinID:
XP_060813392
LinkDB
All DBs
Position
4:6592435..6597846
Genome browser
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQLVDGSRDTPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIIDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgacctcttggattacgaagatgaagaacagactgaacaattagtt
gatggaagtagggatacacctgctaaaaaagaagtgaagggcacatatgtatctattcat
agtagtggatttagggattttcttcttaaaccagaaatattacgtgcaattattgattgt
ggttttgaacatccatctgaagtacaacatgaatgcattccccaagcagtgcttggtatg
gatatattatgtcaagcaaaatctggcatgggaaaaacagctgtatttgtgctagctaca
ttacaacaattagaattaacagaaaaccaggtctatgtccttgtcatgtgtcatacgcga
gaacttgctttccaaattagcaaagaatatgaacgatttagtaaatatatgcctcatgtg
aaggtcggtgtattttttggtggtttaccaattcaaaaagatgaagaagtcctaaagaat
gtatgtcctcacattgttgttggcacaccaggtcgtatccttgctcttgttcgaaataaa
aaattaaatctgaaacacttgaagcactttatacttgatgaatgtgataaaatgctcgag
ctattagatatgcgcagggacgtacaggaaatatttagaagcactccacacggcaaacaa
gtcatgatgttcagcgccacattgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtggatgatgaagcgaaactcacgttgcacggtctacaa
caacattatgtgaaacttaaagagaatgaaaagaacaagaagctatttgaattacttgac
gtacttgaatttaatcaggtagttatctttgtaaaatctgtacaaaggtgtatggctttg
gcacaacttctaacagaacaaaattttcctgcgattggtatacataggggtatgactcag
gaagaacggctatcaaggtaccaacaatttaaagatttccaaaagcgaattttggtagct
acaaatttatttggtcgtggtatggatattgagcgtgtaaacatagtgtttaattacgat
atgccagaagattcggacacatacctacatcgagtagccagagccggtcgtttcggtacc
aagggtcttgctattacattagtcagtgatgaaagtgatgctaagatattgaacgatgtt
caagaacggtttgatgttaatattacagagttaccagatgagatcgatctagcttcatac
attgaaggacgataa
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