Bombus pascuorum (common carder bee): 132906645
Help
Entry
132906645 CDS
T09597
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bpas
Bombus pascuorum (common carder bee)
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bpas04147
]
132906645
00535 Proteoglycans [BR:
bpas00535
]
132906645
00536 Glycosaminoglycan binding proteins [BR:
bpas00536
]
132906645
Exosome [BR:
bpas04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132906645
Proteoglycans [BR:
bpas00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
132906645
Glycosaminoglycan binding proteins [BR:
bpas00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132906645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
RH_dom
Motif
Other DBs
NCBI-GeneID:
132906645
NCBI-ProteinID:
XP_060814982
LinkDB
All DBs
Position
5:complement(4175525..4524375)
Genome browser
AA seq
1178 aa
AA seq
DB search
MRPRLQWLIFVLFCVTRVNADFFNEKKELEYDLLQASVALTDDNNLYIDDGLDGFPSFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLVYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVTLYLNCHEMAKQRVT
RIPLELMFDTASTLYIAQAGPHIQEKYDGLLQSLKLYSGHPADLVKCTADFNFDPDEDLG
SGDINNDLIDGLEDVDTNVPDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGEKGDKG
DKGESVRGPPGPPGPPGQDEGPPGKKGEPGTCTCNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGIAGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGSPGPKGETGIAG
AKGYKGEPGHKGAKGDHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTG
PEGKPGPAGAPGPPGLPGLSGSGGVNVGEAMLREKGDKGESGTRGYKGDKGTKGEKGDKG
DSGPAGIPGVNGIQGPQGNKGEPGKDGVPGAPGVVGAKGEKGERGPPGATAIASSGDYIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKTGAMGEIGLPGWANSMKGRPGTPGLPGPVGPV
GPKGEKGEPGTPSPYGVSVGIKGDKGDDGFPGIPGQPGRDGQRGPPGPPGPPGPPSQGNY
IPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGVRQVPKNIKDFKHNMFFG
TLQGPRTSLDELKALRELKQLKELKEHLGAATTATRGPLESTTKIVPGAVTFQNTEAMTK
MSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPVNPPFEASNL
INQIPVKADGTGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSS
RVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFA
WPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLC
IEVTSETTRRRRSVEVSEDEDEMSENDYKEYLDSLMEN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagattgcagtggttgatattcgtcctgttctgtgtgacgcgcgtcaacgcg
gactttttcaacgagaaaaaagagctggaatatgatttacttcaagcttccgtggcatta
acagacgacaataatttgtacatcgacgatggtctcgacggatttccaagttttggcttc
cgacctggctccgaagttaaacagccgtatcgattatatttgccggaaaaattgccagca
gagttcactttggtggcaacctttaagccgacgtcatttagaaccagttatctcttcgcc
gttctaaatcccttcgaaactgttgtgcaattaggcatccggatatccgatggtccagga
acaaaccagaatgtctcactggtctacaccaattctgatttgcattcgcattcggaagag
gtggcgaaattcacggtgccgaagttgacaaagaaatggtcgaagatcgtaataagagta
tcgacgactgatgtcaccttatatctaaactgtcacgaaatggccaagcaacgagtaacg
aggattcctctggagttgatgttcgacacagccagcacattgtacatcgctcaagctgga
cctcatattcaggaaaaatacgatggtctactgcaatccttgaagctctattccggacat
ccagcggatttggtaaaatgcacggccgacttcaacttcgacccagacgaggatctcggc
tcaggcgatatcaataacgacttgattgacggtttggaagacgttgacactaatgtgccc
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acaccccctcctcccaatccggactacaaagggccgaagggtgagaaaggtgataaagga
gacaaaggagagagcgttcggggacctccaggtccacccggaccacctggtcaagacgag
ggtccaccagggaagaaaggagaaccaggcacgtgcacctgcaatgcaacagccctgatg
gcatcctttacgatgccaaagatgatccaaggaccgaaaggagaacaaggagtgccgggg
caagaggggaaacaaggccaaatggggctgacgggtgcagctggaccacctggagagaga
ggactggaaggaccacagggtcctaagggtgacaaaggagacgtgggaatagcaggaccg
gaaggtcctcaaggacagaaaggggagcctggtcgtgatggaatacccggagagaagggc
gctcaaggacctccaggaccgccaggaaagggtgaattttctggatacgaccccagttgg
aaacctcgaggcatttataggacggagggcatcaccatgagaccaggactgccaggacag
aaaggcgaggccggacttccaggaagcccaggaccgaaaggagagacgggaatcgccggt
gccaaaggatacaaaggcgaaccagggcacaagggtgcaaaaggcgatcatggaaaagaa
ggtccacgaggaattcaaggattcaagggtgaacctggtgctccgggagcaccggggctt
cctggcgcgccaggtgagaatggaagaccagcagagaaaggtgacaaaggagacacagga
ccagaagggaaaccaggccctgcgggtgcacctggaccaccgggattgcctggattgagc
ggctctggtggagtaaacgttggagaagcgatgttaagggaaaagggcgataagggcgag
agtggtacacgaggatacaaaggagataagggcaccaaaggcgagaagggagacaaaggt
gattctggaccagccggaattcctggtgtgaatggtatccaaggaccgcaaggcaacaaa
ggcgagccagggaaggacggagttcccggagcaccgggagtcgtcggtgcaaagggcgaa
aaaggtgagagaggtccgccaggagctacagctatagcgagctctggagactacatcacc
atcaaaggtgaaaaaggagcagaaggcaagagaggtagaagagggcgtcctggaccacca
ggaccggtcggcccacctgggaagacgggagcgatgggagaaattgggttacctggatgg
gcgaactccatgaaaggtcgtcctggaactcccggacttcctggacctgttggaccagtg
gggcccaagggagaaaaaggagaacctggtacaccgagcccttacggagtctctgtcggc
atcaaaggcgataagggagacgatggtttccctggaattcctggacaacctggaagagac
ggtcaaagaggacctccagggccacccggaccacctggaccaccgtctcaaggaaactat
attccagttccgggtcccccggggcctcctggaccgccaggaccacctggactatctttg
attggacagaaaggagaaccaggaattggtagaagtcacatctttggcgaaagagactat
tacggcgttagacaggttccaaagaatataaaagattttaaacacaatatgttctttggc
acgctgcaaggacctagaactagtctagacgaattgaaggctctgcgagaactaaagcaa
ctgaaggaacttaaagaacatttaggtgctgcaaccaccgcaactagaggtcccttagaa
agtaccacgaagatcgtaccaggagctgtgactttccaaaataccgaagctatgaccaaa
atgtctgccgtgagcccagttggaacattagcttatattattgacgagcaagctctgctc
gttagagtgaacaatggctggcaatacatcgcattgggttcgcttctaccaataactaca
ccagcaccaccaaccacgtcaccgcctccggtgaatccacctttcgaagcttccaacctg
atcaaccagatacccgtaaaagcagacggaacagggtggtatccacggatgttacgaatg
gctgctttgaacgagccatttacgggagacatgcacggtgtacgtggagctgactacgct
tgttatcgacaagcgaagcgagctggtttgaggggtacgttccgagcattcctcagctcc
agagttcaaaatgttgacagcatcgtgagacttggggaccgtgatcttcctatagttaac
ataaagggcgatgtacttttcaactcgtggaaagagatgttcaacggaaacggggcctac
ttctcgcaaaatccaaggatttacagtttcaatggcaaaaatatcctcaccgactttgca
tggccagaaaaggtggcatggcacggatcgcacaaattaggagaccgggcaatggacacg
tattgcgacgcctggcattcaagtagttcggatcgttacggattaggatcaccgttaact
gggggacgcctcttggagcaagttcgttattcctgcgacaacaagttcgcgttgctctgt
atagaagtaaccagcgagaccacaagaaggaggagaagcgtcgaagtttcggaggatgag
gacgaaatgtcggagaacgattataaggagtacttggattctctgatggaaaactaa
DBGET
integrated database retrieval system
