Bombus pascuorum (common carder bee): 132907158
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Entry
132907158 CDS
T09597
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03013
Nucleocytoplasmic transport
bpas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132907158
03015 mRNA surveillance pathway
132907158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132907158
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132907158
5.6.2.5 RNA 5'-3' helicase
132907158
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132907158
mRNA cycle factors
Common to processing body (P body) and stress granule
132907158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
132907158
NCBI-ProteinID:
XP_060815935
LinkDB
All DBs
Position
5:7737218..7742266
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AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQSEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcatacggacccagcagtcagactctgacgtttctcgacaccgaagaa
gctgatttaattggtgcagatacacagggtagcgaattcgacttcactgatttcacgtta
ccctcaccgagtcaaactcaggcctcgcaacacgatgctgcccaaagtcaacctaaccaa
cccgtacaggttaatggaacaagcggcagttcatctttggagttgaagatatctggagca
gcacaaagccttgcagaattgcagtttgaagaagaagaagaagaggcatattacaatcgt
gatttgccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgcaatgtttgccgcaagtggttctgtaatggtcgtggaaatacatctggttctcacatt
atcaaccaccttgtcagagccaaacataaggaagttactttacacagagatggacctttg
ggggagactgtccttgaatgttactcttgcgctgttaggaatgttttcgttcttggcttt
attcctgcaaaagcagattctgttgttgtattactctgccgccaaccatgtgcggcgcag
agttcattgaaggatatgaattgggatcaagaacaatggaagccattgatagaagatcgt
tcctttttagcttggttagtaaaaattccttcagaacaggaacaattgcgagccagacaa
atttcggcccaacaaatcaataagttagaggaattatggcgagacaatgttgatgcaaca
tttcaagatcttgaaaaacccggtgtagatgaagaaccgcaacaagtacttctgcggtat
gaagatggataccagtatcagaacatatttggccctctcgtaaaattagaagccgattat
gataaacgtttaaaggaatctcaaacgcaagaaaacatcgaagtacgttgggatgttgga
ctaaacaaaaagacaatcgcctattttatgttagcaaaaactgacggtgatatgaaattg
atgcatggtgatgaactaagacttcgctacttgggtgaacttcacaagccttggtctgga
attggacatgtaatcaagatccctgataattatggagaggaagtagggatcgaattgaaa
aataattctggcgccccaacggagtgtgttagtaacttcgtcgttgattttatttggaaa
agcactagtttcgatcgcatgcagttagcgttgcggaaatttgctgtggacgacacttct
gtatccggttacatataccatagattgttaggacatgaggtagaagaagttctgtttcgc
tgccatcttcctaaacatttcagtgctcctaatctgccagacttaaatcgttcacaagta
tatgccgtgaaacacgctgtacaaagacccttgtctctaattcagggaccgcctggcacg
ggaaaaactgtaaccagcgctacgatagtttatcaactcgtcaaacaaaacggtggtcct
gtattagtatgtgctccttcgaacacggctgtcgatcaactaacagaaaagatacacaaa
tccaatttaaaggttgtaagactctgtgcgaagtcacgagaagcaattgattcaccagta
agcttccttgccttacataatcaaatcaagaatatggagacgaatactgaattgcaaaag
ttgcaacaactaaaggatgagactggtgaattgtctagcgttgacgaaaaacgttataga
ttattaaagaaagcagcagaaaaagaattattagaggcagctgatgtgatttgctgcacc
tgtgttggggctggtgatccaaggttgcacagacttaaatttcactcaattcttattgat
gaaagtatgcaagcaacggagcctgagtgtatggtaccagttgttcttggagcgaagcaa
ctaatccttgttggtgatcattgtcaattagggccagtagttatgtgcaagaaagctgcc
agagctggtttatcacagtctctttttgaaagattagtggtattaggaattagacctttc
agattggaagtacaatatcgtatgcatccagatctatcacgattcccatcaaactttttt
tatgagggctctttgcaaaacggcgtatgcgcggacgagaggaaattgttgaaaattgac
tttccttggccagcacctgacaaacctatgtttttctatgttacccaaggccaagaagaa
attgcaggaagtggtacatcatacctaaatcgaacagaagcatcgaacgttgaaaaaata
gcaacaagatttttacgttgtggagtaaaacctgaacaaattggagtaataactccgtac
gaaggtcaacgagcttatttagtgcaatacatgcaataccaagggtccttgcactctaaa
ctgtaccaggaaatcgaagtcgctagcgtagatgctttccaaggcagagaaaaagatata
ataattatgtcttgcgttcgatcgaacgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaacgttgcgttgactcgcgcgaaatacggaattataatcgttggaaatcca
aaggtattgtcgaaacaaccattgtggaatcatctattaagtttctataaggaacagaaa
gttcttgtagaaggaccactgaacaatcttaaagaatctatgattcaattcgccaaacca
aagaaactcgtcaatgctgctaatccaggctctcactttatgtctacgtcgatgtacgac
gcaagggaagctttgatcccaggttcggtatacgatagatcaggtactcaggtaaatgga
acgcagaatcacaatccttattaccaaaggaacgtacctttagacatcttcagcagaacc
cacgatactattagttacattagcccagaaagagctcaagcagcgatgaacaacgtacca
gttccagtgggaatgttcatgaatatggcacacgtaccaccacggttctataatcagcat
cagcaggccctacaggctagacaaaaccaacgtaatcggcgaggtacagctttatcgaag
aacaaacaaggcccacgaatgggtaaactaagtcaatcagaacagaatactcagccatat
agccagccaggattaccgttaacacaaggtacgacgcaaggtatgtcacaaccaggtttc
agcctttctcaacccggactgagtcaagcggaactttctcaagattcgttcgctgtcgga
gagtttcaatcacagatggacggattattatcacaagattcaacttatcaaggtgatcga
agtggtttttatcaatccggacagtcacaagccgggggacaattctcccagccatattga
DBGET
integrated database retrieval system
