KEGG   Bombus pascuorum (common carder bee): 132907392
Entry
132907392         CDS       T09597                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
bpas  Bombus pascuorum (common carder bee)
Pathway
bpas03030  DNA replication
bpas03410  Base excision repair
bpas03420  Nucleotide excision repair
bpas03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bpas00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132907392
   03410 Base excision repair
    132907392
   03420 Nucleotide excision repair
    132907392
   03430 Mismatch repair
    132907392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpas03032]
    132907392
   03036 Chromosome and associated proteins [BR:bpas03036]
    132907392
   03400 DNA repair and recombination proteins [BR:bpas03400]
    132907392
DNA replication proteins [BR:bpas03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    132907392
  DNA Replication Termination Factors
   ELG1-RFC complex
    132907392
Chromosome and associated proteins [BR:bpas03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    132907392
DNA repair and recombination proteins [BR:bpas03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     132907392
  Check point factors
   HRAD17(Rad24)-RFC complex
    132907392
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RuvB_N AAA_14 AAA_22 RCF1-5-like_lid AAA_assoc_2 AAA_11 AAA_5 ResIII AAA_16 DUF815 AAA_24 DEAD AAA_7 AAA_30 Mg_chelatase PhoH AAA_19 AAA_2 TIP49 ATPase_2
Other DBs
NCBI-GeneID: 132907392
NCBI-ProteinID: XP_060816436
LinkDB
Position
5:2685696..2688007
AA seq 329 aa
MTEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDDNQLPHLLFYGPPGTGKTST
ILACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADA
MTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTEQILPRLDTI
IKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKN
IINWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLIIKLAEIE
KRVSIGCSEAVQLNALVSAFQRARDIEIS
NT seq 990 nt   +upstreamnt  +downstreamnt
atgacagagaaacctactcaaaccaccaatttaccatgggtggaaaagtatcgaccgaag
aaattagatgatttgatatctcacgaggaaatcatcaaaactataaataaattcattgat
gataatcagcttcctcatctccttttttatggacctcctggtacagggaaaacaagtaca
atacttgcttgtgcacgtaaattatatacaccagcccaatttaattcaatggtattagaa
atgaatgcttcagatgatagaggtattggtatagttagaggacaaatcctaagctttgcg
agtacaggtacaatgtatagatctggttttaaattaatcatccttgatgaagctgatgct
atgacaaaggatgcccagaatgctcttaggagaataatagagaagtacacagacaatgta
aggttttgtattatatgtaattatctcagtcaaattatccctgcccttcagtctcggtgc
actaaatttaggtttggccccttgtctacagagcaaattttaccaaggctagataccatt
attaaagaagagaatttaaatgtttcggaggatggaaagcaagcattgataacattgagt
ggaggagatatgaggaaagttttgaatgtcctccaaagtacttcgcttgctttcagcgca
gttacagaagaaaatgtttattcttgtgtaggacatcctcttccaatcgatataaaaaac
atcatcaattggttgttgaacgaatcgtatgaattatgttattgtaaaatacaagacata
aaactaaagaaaggactggcattgcaggatatattaacagaattgcatctgtttgtaaat
aaaattgaatttccagattccatacttatcgatttaataattaaactagccgaaatagag
aaaagggtatctatcggttgtagcgaagcggtacaattaaatgccctcgtttcagcattt
caaagggctcgcgatatcgagatttcttag

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