Bombus pascuorum (common carder bee): 132908241
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Entry
132908241 CDS
T09597
Name
(RefSeq) uncharacterized protein LOC132908241 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132908241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpas03021
]
132908241
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132908241
Transcription machinery [BR:
bpas03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132908241
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132908241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
132908241
NCBI-ProteinID:
XP_060818019
LinkDB
All DBs
Position
6:complement(13327212..13337748)
Genome browser
AA seq
1900 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
AVTTHITPSTDTVTQGKPVATTVPSQASKQVAKQFPAAAASLLKNAGTNNGPRIAPASSI
AVASAKPVSRDPRLKTTSAQDVPVSSVDPRQRISTPTQKDSRGEGQAQLAAHTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNNKNFSGNANKDAV
SHRTSQKKDPRLSSNSSGNLNSNNSKGSQSLSMGSNSSLSASNRGGGNNDSKSKDSKSSN
SRISSSSAIEKSASSKSSHRKLGNKSRSKQPQTSPCKIPKVDRDASPVRSKSREKDSGDS
SPSSRTSPQSFQNSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNLSLSNSSGVTEEEQSGS
LIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAAEPTLESSSKDED
LRATLPLPGAAASVLEKKEDLDLRVLPPAVNTNKRQTAEHMESTLAKKTKAEKFDALFGN
EDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNTDDKRDARDR
NRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQAA
EQLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDMAGPGERTT
TFSPSGDKEMMRNKDHPIARNPNGPRWQNQPWQQPGPWAHPPGPPYGGPQGHFNSDFRPV
GPWQNPRHFGPMRPDYQYHGGFNHSIGPNPRLGPGMIGPMGPNGPLMSNLLPNGPIGPMG
MPNPPISLPGMNGPGMMINNGPMTSLISNTNMSSLNASRNVSPSSSSKYDIEDGDQNYTT
TMIKNPNPHSRELPPPDSKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPR
EIGFQDGIRRILIDDKITITCAFNDNYKEFIYEGEVHRIKLGAPTRELYIDDRWYECYFG
GMPITVDLGGKKVNVKLEGPPPLVKIGSVKRTDLVVAKINLIINARNMVPVFLDAKPQIF
EIEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVK
IAGMKGEEPIEAPPTPPLLTQKPKVDAASTPTQFSAVEHESTSQDGSDLRSTPKPDLQLD
VLSSALPSAMAPSSGLSYQAEPAENPPTTAPPLSLPLNMNELFQRLVETGIVSNLSEQKK
QEEEEKKEPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDW
HFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAED
SPQEASQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYK
EKSLVRALEKSALEETIEEMEDEKKESSDETFAEENKTDELSMEALNTEFETVEPSDEII
EDKVPEESTEMEVKEDETIIEDNADIEQNVKMEEQELEYSNKEDVDVESIEKEDTVETEI
PETENVDKSFENIKIKEEPIDEPEEQLEEHFDFTSVEIKEEPIEQEPDPEESIITEPATV
DTTYAAVKSSIDGNVELDSTPAAMPAAPSRIKINITKPLCISKEPEDSKEKEKPIVETPI
EEIIEPLVPASIKPALQGRKLSNLPPVERGQELSGLCSIM
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaggaaatagcggatgagtatatctcatcgttgtctgatttg
acgattaacagtaaaccattaattaatatgcttactatgttggctgaagataacatagaa
catgcaccagcaattgtacaagctgttgagaatcatctacaaaaggtgagaagtgatatc
aaattacctgtcctttacttgattgattcaattgtgaagaacgttaatggagcatattta
aatctcttcactcaaaatattgtaaatactttttgtggagtgtttgaaaaggtggatgag
aatacaagagccagcatgtggaaattgaggcaaacatggaatgatgtttttccagcaaag
aaattattttctttggatgtacgagtgcaaagtattgatcctgcctggccaatcactgcc
tctcctactagtgtttcttctggatctatccatgttaatcctcgttttttttcaatgccc
caacaatcagcaacatctattgtctcgcaaccaatcgtagcacctgttaagcttccacca
ggtgatcctgtgacgccaacggaagcagcaatgcgagagcaattattaaagaaacagcga
gaactgatagaactacagaaaaaaaagattgaattagaattacttcaagctaaagctaat
ttagaacaacaacagcggcaactcgataagcaagctggaaatttaaaagctgaactggtt
gcagttacaacacatattacgccaagcacagatactgtcacgcaagggaaacctgttgca
accactgtgccaagtcaagcatcaaagcaagtagcaaaacagtttccagcagcagccgct
tcgcttctgaaaaatgcaggaacgaacaatggcccacgaattgcaccagctagtagtata
gcagtagcatcagctaaaccggtatctcgtgatccaagactaaaaactacctcggctcaa
gatgtaccagtttcaagcgtggatcctcgtcagcgaataagtacaccaactcagaaggat
tcgcggggtgaaggccaagcgcagttagcggcacatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacattaaacgctagtaataacaataatgctaatacg
aacctcaacaataataataacaataaaaatttcagtggtaacgcaaataaagatgctgtg
tcgcatcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaaccta
aacagtaataattccaaaggttctcaaagtctatctatgggtagcaatagttctttatct
gcgagtaataggggaggtggaaataacgattccaagtcgaaagactcgaagagttcgaat
tctcgaatttcttcatcttcggcaatcgaaaaatctgcttcctcaaaatcctcgcataga
aaactaggtaacaaatcgcgatctaaacaacctcaaacatctccgtgtaaaataccgaaa
gtcgacagagatgccagtcctgttaggtccaaatctcgtgaaaaagatagtggagacagt
tcaccatcctcgcgtacctctccccaatccttccaaaactctaaaaatcggaaaaagaac
acaaaatcgagaaaacgcagtccaagtcctccatatagaattcctaggcgtaatgatgca
aaatccaatttaagtctaagcaattctagtggtgttactgaggaggagcaatctggttca
ttgatagtctctcctcctcacccacctacatttaaagaaattagaccgaatgctagacaa
agaaattacgtaagacgtaataaggatggcagtcttagtcccgagcgctctccagcaaat
gctggaaacgttcaaactgctgcggaaccaactttggaatcatccagcaaagatgaagat
ttgagagcaacactacctcttccaggtgcagccgcttctgtattagaaaagaaagaggac
ttagatttgcgtgtattaccaccagcagttaatactaacaaaagacaaactgcagaacac
atggaatctacattagcaaagaaaacaaaagctgaaaagtttgatgcattatttggaaat
gaagatgttgatctgcgaacattaactcatcctaaagctggacgaccacctacaccgccc
ccacctgtaatatctggtgaagatggcaaagatgggtgggcaaaattaaagacaccatca
aagaatgacagagaaaagcaagctaataatactgatgataagcgtgatgctagagatcgt
aacagagatagattgggtagactgaggctttacaacaaacttccggatgatcctaaagaa
agaagaagaacattatcgaatgaagatcaagataacagatcaggtcgaagaggtcgagaa
aatgataaacctgaaaagaatgaagatagaaatatagaaattataatgaaacaagctgcc
gaacaattgaatcaaggatctattactaaaactcaatacaatactcttattcaagaagtt
ttacatatgagtgaagatcggaaattaagagctgcacaacgaaaggaaaaagaagtaggt
tctatagtatgggaaaagggtgtaaatttggatatggcgggccccggtgagcgtacaact
acatttagtccttctggtgataaggaaatgatgagaaacaaagatcatcctattgcaaga
aatccaaacggccctagatggcagaatcaaccatggcaacaaccaggaccatgggctcat
ccaccgggacctccttatggtggaccgcaaggacattttaattcagattttaggccagtt
ggtccatggcaaaatccaagacacttcggaccaatgcgacccgactatcaatatcacggt
ggctttaatcactctattggtccaaacccacgattaggacctggaatgataggacctatg
ggacctaatggtccgctcatgtcaaatttattacctaatggtccaattgggccaatgggt
atgcctaatccgcctatatcattaccgggaatgaacggacctggaatgatgataaataat
ggaccaatgacaagtcttatttcaaatacaaatatgtcatcattgaatgcttcaagaaac
gtatcgccaagttcgtcttcgaagtatgatatcgaagatggtgatcaaaattatactaca
acgatgataaagaatccaaatcctcatagtcgtgaattaccgccaccagattcaaaatta
ttagatgaaattgcaagagatactatgaaatctatagatatagacatacagcatatacca
cgtgaaatcaggtactatggtcaaactggagtagtttttatgaattgggatgatccaaga
gaaatcggatttcaagatggtatacggcggattttaattgatgataagatcactataacc
tgtgcatttaatgataattacaaagaatttatttatgaaggtgaagttcatagaattaaa
ttaggtgcgccaacgagagagttatatattgatgataggtggtatgagtgttatttcggt
ggtatgccaataacagtagatcttggtggtaaaaaggttaacgtgaaattggaaggacct
ccaccccttgttaagattggttctgtaaagagaacggacttagtagttgccaaaattaat
cttattatcaatgcccgaaatatggttcctgtatttttagatgcaaaacctcaaatattt
gaaattgaagggaaacctcatacgcttgaatttatagactctttacaaacagttctttta
aatggacggccatttaaagtggaattcggtggactacctaaaccaattattgttagggat
aaaaagcattttataagattttcggtactgcctagaggtgtccgaccaggatatgttaag
atagcaggtatgaaaggtgaagaacctatcgaagcaccacctaccccgcctctgttgaca
caaaagccgaaagtggatgcagcttctacaccaacgcagttctctgctgttgaacatgaa
tcaacgtcacaagatggttcggatcttagatctactcctaaaccggatttgcaattagat
gtgttatcttcagctttaccatctgcaatggcaccatcgtctggattatcttatcaagct
gaaccagctgaaaatccacctacaactgctccaccattatcattaccactgaatatgaat
gaactgtttcagagattagtagagactggtattgtatcaaatctttctgaacaaaagaaa
caagaagaggaagaaaagaaggaaccagaaattattcctgtttcatttgataaaccagaa
acacttaaagttaagcaaccggctattgcagcagcattgtacagtggcatgcagtgtagt
tcttgtggtgccagatttgcaccagaattagcaactcggtatagtcatcatttagattgg
cactttaggcaaaacagacgagaaagagattctgcaaggaaggctcattcacgaccttgg
tattatgatgttagtgattggatacagtttgaagaaattgaagatttagaagatagagta
caaagttggtttgaaacggaaaaacagacggctgatacggaaggtatcacggccgaggat
tctcctcaagaagcctcacagcctagtgttcccactggaactgacgaggattctagatgt
caagtatgtcatgatgcatttgaacaattttataatgaagaaaaggaggagtggcatcta
agacctgcaattaactttgaaggaaagaattatcatccattgtgtcttgatgattacaag
gaaaagagtctcgtgagagctttggaaaaatctgcgcttgaagaaacaatagaggaaatg
gaggatgaaaaaaaggagagctcagatgaaacgttcgcagaagaaaataagactgatgaa
ttaagtatggaagcattaaatactgaattcgaaacagtagaaccgtcggatgaaataata
gaagataaggtaccggaagaatctactgaaatggaagttaaagaggatgaaactataatt
gaagataatgcagatattgaacaaaatgtaaaaatggaagaacaagaattagaatatagt
aataaggaggatgttgatgtggaaagtatagaaaaagaagatacagtcgaaacagaaata
ccagaaacagaaaatgtggataaatcttttgaaaatattaaaattaaagaagaaccaatt
gacgaacctgaagaacaattagaagaacattttgattttactagtgtagaaattaaagaa
gaacctattgagcaggaaccagatcctgaagaaagtataataactgaacctgctacggtt
gatacaacatacgcagctgtgaagagttctattgacgggaatgtagaattggattctacg
cctgcggcgatgccagcggctccatctcggattaagatcaatattacgaaaccattgtgt
atcagtaaagagccagaggattcaaaggaaaaagaaaaacctatagttgaaacacctatt
gaagaaataatagaacctttggtgcctgcttctatcaaacctgctttgcaaggtagaaaa
ctttcaaatttacctcctgtggaaagagggcaagagttatcgggactctgctcaattatg
taa
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