Bombus pascuorum (common carder bee): 132908301
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Entry
132908301 CDS
T09597
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpas03041
]
132908301
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132908301
Spliceosome [BR:
bpas03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132908301
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
Ank_2
nSTAND3
HA2_N
Ank
AAA_19
AAA_22
ATPase
Ank_5
PhoH
Flavi_DEAD
Cas_TM1802
NPHP3_N
Ank_3
NACHT
Motif
Other DBs
NCBI-GeneID:
132908301
NCBI-ProteinID:
XP_060818190
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All DBs
Position
1:21880157..21885653
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AA seq
1157 aa
AA seq
DB search
MPRRNRSKKAPLIGEDTRIAVNLTLKKLLETHDQKELEFPSSYTAEERAYIHKLAYELGL
KSKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKASRQSIYNLLQAFPLNHKECQDLLPP
IERERPPNTDVSVNTNTKAMGRLNNSVPQIPQLKTNFDVLNYRKALPIFSFREDILDALN
TNQVVIIGGETGSGKTTQVPQFILEHCQQRQQPCRIICTQPRRLSAVSVAERVAFERDEK
IGQTFGYQIRLESRVAPKTLLTYCTNGVLLRTLMAGDSALSTVTHVIMDEVHERDRFCDF
LLIALKDAIQKHKSLKLVLMSATLDVNIFVKYFNKCAVVNVMGRSYDVDTYFLEDVLKIT
GYMTKEMLSKRKEFMNKKDQHKVLETWTQYKPQQSGSSTMNERCILPAPILAQQNEPVPE
KIKLEPWLAEEMDKSISEAWLRGGEDNFAQLLYFILSENVSVDYQHSTTFVTPLMIAAGK
GCINTTEQLLNLGANLNLRAANEWTALDWAKNMNQAECAELIEAYMKTYDCTLQDETKVH
AKDVSLSEEDKFLLDVYQHTFNDDKINYDLLLQLILHIHLKMPPGSLLVFLPGYDDIVTM
REKINNEEKEMNKGLRYNLYVLHSNMQTCDQKKVFKPSPVGSRKIILATNIAETSITIDD
VVYVIDSGKVKEKSFDALSGVCTLKSNWISQACAKQRKGRAGRCRKGICYRLFSSVRYNS
MEPYQTPEILRSPLQELCLYTKHLAPGNTPIAEFLDRALEPPSNVITRNAVQLLKTIDAL
DPWEDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPVLTIVCSLAYKDPFILPLQPSQK
RAATAARKRFATNTYSDHMAVLRAFQGWQNARASGKERTFCEQNFISAAVMEMVVGMRTQ
LLGQLRASGFVRARGPGDIRDLNSNSENWAVVKAALTAGLYPNLIRLDREHLQLRTQKEV
KVSFHPSSTLRDYPKSPRMTSTQTYAANVEALPCDWLLYEEMSRTGRFCHVKMVTLINPL
TVALFCGPARLSVDVIYEAESVPESESDSEVDESNEGTIFKLDDWVVFKLDPETARFFLH
LRQKWNALFLRRMKTPNKAMSQLDEKVVSTLVSVITNEEQSCGLQQPSGIGQRPRPLIVD
YYPANVRRTDDFVERSF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcagaaaccgcagtaagaaagcccctcttattggggaggatactagaattgca
gtaaatttaacgcttaaaaaattattggaaactcatgatcaaaaagaattagaatttcca
tcttcgtatactgcggaagaaagagcctatattcataaattagcgtatgaacttggatta
aaatctaaaagtagaggtaaaggtacaaatcgttttttaactgtgtacaaaagagaagga
tcgacaatagtccaagctgacgctgtaataaaattacaaaaagcatcaagacaaagtata
tataatttattacaggcttttccactaaaccataaagaatgtcaggatttgttaccgccg
attgaacgagaacggcctcctaatacagatgtttcagtaaatacaaatacaaaagcaatg
ggtcgattaaataacagcgtgcctcaaataccacaattgaaaactaattttgatgtatta
aattatcgtaaagcactcccaatatttagcttccgggaagatatccttgatgcattaaac
accaatcaggtagtcataataggaggggaaacaggtagtggtaaaactacccaagttcca
caatttattcttgaacattgccaacaaagacaacaaccttgtagaattatttgcactcaa
ccaaggagattgtcagctgtttcagtggctgaaagagtagcatttgaaagagatgaaaaa
attggtcaaacgttcggttatcaaataaggcttgaaagtagagttgccccaaaaactctt
ttaacatactgtacaaatggtgttctccttagaactcttatggcaggagattctgcttta
agtactgtcacacatgttatcatggatgaagttcatgaacgcgataggttttgcgatttt
cttctaatagcattaaaagatgcaatacaaaaacataaatctcttaaacttgtgcttatg
agcgccacattggatgttaacatttttgttaaatattttaacaaatgtgcagtcgtaaat
gtcatgggaagatcatatgatgtcgatacgtattttctcgaagatgttctaaaaataacg
ggttatatgacgaaagaaatgctttcaaagagaaaagagtttatgaataaaaaagatcaa
cataaagtgttagaaacttggactcaatataaacctcaacaatcaggatcaagtactatg
aatgaaagatgtatattgcctgctccaattctagcacaacagaatgagccagttcctgaa
aaaataaaattagaaccatggctagccgaagaaatggataaaagtatttctgaagcatgg
ttacgcggaggcgaagataattttgcacaacttttatatttcatactttctgaaaatgtt
tcggtagattatcaacattccacgacattcgtaactccgcttatgattgccgcaggaaaa
ggatgtataaataccacagaacagcttttaaatttaggtgcaaatttaaacctacgagca
gccaatgaatggactgcattagattgggcaaagaatatgaatcaagctgaatgtgctgag
ttaatagaagcatatatgaaaacttatgactgtacactacaggatgaaacaaaagtacat
gctaaagatgtttcactttcggaagaagataaatttttattagatgtataccaacataca
tttaatgatgataaaatcaattatgatctcctcttacaattaattttgcacatccactta
aagatgcctcctggttctcttttagtatttttaccaggatatgatgatattgtaactatg
agagaaaagataaataatgaagaaaaggaaatgaataagggtttacgctataatttgtat
gtacttcattcaaatatgcaaacatgtgatcaaaagaaagtatttaagccaagtcccgtg
ggatcacggaaaatcattcttgcaacaaatatcgctgaaacaagtatcacaattgatgat
gtcgtatatgttattgattcaggaaaagttaaagaaaaatcgttcgatgcattatcggga
gtgtgtacacttaaatctaattggatttcccaagcttgtgcaaaacaacgtaaaggtaga
gcagggagatgtagaaaagggatttgttatcggctattttcgtcggttcgatataatagc
atggagccttatcaaactccagaaatcttaagatcaccactccaagaactgtgtttgtat
acaaaacatttagctccaggaaatacacctatcgcagaatttttagatcgagcattggaa
ccaccttctaatgtaataacaagaaatgcagttcaattattgaagactatcgacgcatta
gatccgtgggaagatctcactgaattaggaagtcatttgcttgatttaccaattgaacca
agactaggaaaaatgttactgtatgctgtagttttaaaatgcttagatcctgtcttgact
attgtatgtagtttagcatacaaagatccctttatattacccctgcaaccatcacaaaag
agagctgcaactgcggctcgtaagagatttgcgactaatacatattccgatcatatggca
gttttacgtgctttccaagggtggcagaatgcacgtgcaagcggcaaagaacgtacattt
tgcgaacaaaattttatttccgctgctgtgatggagatggtagttggaatgcgtacacaa
ctgcttggtcagcttcgtgcatctggatttgttagagcaagagggccaggagatattaga
gacttgaattctaattctgaaaattgggccgtagtgaaagcagctctgactgctggttta
tatccgaacctaataagactagacagagagcatttgcaactaagaacacagaaagaagtg
aaagtatctttccatccatcatcaactttaagagattatcccaaatcaccaaggatgaca
tccactcaaacatacgcagctaatgtagaagctttgccctgtgattggttactttatgaa
gaaatgagtcgtacaggacgattttgtcatgttaaaatggttactctgatcaatccatta
acagtagctttgttctgcggaccagcaagattgtccgtagacgtaatttatgaagctgag
tctgtaccagagagtgaatcagattctgaagttgatgaaagtaacgaagggacgattttt
aaactcgacgattgggtagtatttaaacttgatccagaaactgctagattctttttacat
ttaagacaaaaatggaatgccttgttcttgagacgtatgaaaacgccgaataaagcaatg
tcgcaacttgacgaaaaggtagtgagcacattagtaagtgtaattacaaatgaagaacag
tcatgtggattacaacaaccatctggtattggtcaaagaccacgccctttaattgttgat
tattatcctgccaatgttaggagaacagatgactttgtagagaggagtttttaa
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