Bombus pascuorum (common carder bee): 132909400
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Entry
132909400 CDS
T09597
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132909400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpas03041
]
132909400
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132909400
Spliceosome [BR:
bpas03041
]
Complex C
Other components
Step II factors
132909400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
nSTAND_NTPase5
ResIII
AAA_30
Sigma54_activ_2
AAA_16
T2SSE
ATPase_2
ABC_tran
AAA_24
PhoH
ATPase
cobW
Sigma54_activat
NB-ARC
AAA_7
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
132909400
NCBI-ProteinID:
XP_060820185
LinkDB
All DBs
Position
7
Genome browser
AA seq
1075 aa
AA seq
DB search
MMDTVNESSLYRLEGIAKNQAGGLIIRKKPSDHTFKKPQVSVLGLDKLAKRKRQENLQEV
NSLKSESSSPKSEIKKRKYRSYAEETPTHTGGANTEAQQRLEARLKHQRLSAQDKNHRDN
YKDKDRNRDRDGNKDRYRDWDRERSRSRDSVRDSSRQTPLRFKDKPQTPIFNTKDSRSKS
NWDDDEDEEPRKPSWDHPWEEEQQRLDREWYALDDGENHAFADVSEEYSSKKEMELEAKR
QKLLSSQQRQVNKDNELWERNRMLTSGVISSLDHDDDPDDEGETRVHLLVRNVVPPFLDG
RIVFTKQSEPVVPVRDPTSDMAVVARKGSALVRAYREEKERKRAQKKDWELAGTHIGNIM
GVRDRQKEDKEDPGQETDFKAGQKYALHIRDEVNGKAKYRSIQHQRRSLPVFAVRQELLN
VIRENSVVVIVGETGSGKTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMAT
ALGDKVGYAIRFEDCTSKDTVIKYMTDGILLRESLREEDLDQYSVIIMDEAHERSLSTDI
LFGLLRKVVARRHDLKLIVTSATMDSSKFSTFFGNAATFQIPGRTFPVEVLHAKNPIEDY
VDAAVKQVLQIHLQPRSGDVLVFMPGQEDIEVTCEALKEHLAEIESAPPLTILPIYSQLP
SDLQAKIFQRSEEGSRKCVVATNIAETSLTVDGIVFVVDSGYCKLKIYNPRIGMDALQVY
PVSRANADQRAGRAGRTGPGTCYRLYTQRQYLDELLLTGVPEIQRTNLANTVLLLKSLGV
QDILGFHFMDPPPQENILNSLYQLWMLGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVAS
QLGCTADILIIVSMLSVPSIFYRPKGREEDSDSAREKFQVPESDHLTYLNVYNRWKANGY
SNSWCNAHFIHAKAMRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAAR
LKGIGEYVNCRTGMPCHLHPTSALFRMGFTPDYVVYHQLVMTGKQYIQCATAVDGHWLAE
LGPMLFSVKETGXSGRAKRRARHLHETEGQMKEAEEETKARAREQLEREQVSIRK
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgatggatacagtaaatgagtcgagtttgtatagattagaagggattgcgaaaaatcaa
gcaggaggtttgattattcggaagaaaccctctgatcatacatttaaaaaacctcaggta
tctgtcttgggtcttgacaaacttgcaaaacgaaaaaggcaagaaaatttacaggaggtt
aactcactgaaatctgaatcaagttcaccaaaatcagagattaagaaaagaaaatacaga
tcttatgctgaagaaactccaactcatactggtggggcgaatactgaggcacaacaaaga
ttagaagcacgattaaagcatcaaagattgagtgcacaggacaaaaatcatagagacaat
tataaggacaaagatcggaatagagatagggatgggaataaggatcgatatagagattgg
gatagagaaagaagtagaagcagagacagtgttagagatagtagtagacaaacaccctta
aggtttaaagataaacctcaaactccaatatttaatacaaaggattcaagatctaaaagt
aattgggatgatgacgaagatgaagaaccgagaaaacccagttgggatcatccgtgggaa
gaagagcaacaaagactggatagagaatggtatgccttggatgatggagaaaatcatgct
tttgctgacgtttctgaagaatacagcagtaaaaaggaaatggaattggaagcaaaaaga
cagaagcttctttcctcacaacagcgacaggtaaataaagataacgaattgtgggaacgt
aacagaatgttaacatctggtgtcataagttccttggatcatgatgatgatcctgacgat
gaaggagaaaccagagtacatctattggtccgtaatgttgttccaccatttctggatggt
cgaattgtattcactaaacaatcagagcctgttgtacctgtacgtgaccctacttctgat
atggcagttgtagcaagaaaagggtcggccttggtaagagcatatcgcgaagaaaaagag
cggaaaagggcgcagaaaaaggattgggaactagctggaactcatatcggtaatatcatg
ggtgtacgtgatagacaaaaagaggataaggaagatccaggtcaagaaactgacttcaaa
gctggacaaaaatatgcgcttcatatacgggatgaagttaatggaaaagctaaatacagg
tccattcaacaccagaggaggagtcttccagtatttgctgtacgacaagaattactaaat
gtaattagagaaaacagcgtagtagttattgttggagaaactggcagtggaaaaacaaca
caactgactcaatatctacacgaagacggttatagtcgctatggcataattggatgtaca
caaccaagaagagtagcagctatgtctgtagcaaaaagagtttctgatgaaatggctact
gctttaggagacaaagtcggttatgctattcgttttgaggattgcacttcaaaagatacc
gttattaaatatatgaccgatggtatcttattaagagaaagcttaagggaagaagatttg
gatcaatatagtgtaattatcatggatgaagctcacgaaagatctttatctactgatatt
ttatttggtttgctgagaaaggttgtagccagacgacatgatctgaaattgatcgtaaca
tccgctacaatggactctagcaaattttcaacattttttggaaatgctgcgacattccaa
attccaggtcgcacatttccagttgaagtactacacgcaaagaatccaatcgaagactat
gttgatgctgctgtcaaacaagtgttacaaattcatttgcaacctcgttcaggcgatgta
ttggtctttatgcccggtcaggaagacattgaagttacttgcgaagctttgaaagaacat
ttagcagagatcgaatctgctcctccacttaccattctacctatttactcgcaactgccc
tcggatttacaagctaaaattttccaacgttcagaggaaggttcgcgaaaatgcgttgta
gcaacaaatatagccgaaacttcattaaccgtcgacggaattgtattcgtcgtggactct
ggctattgcaagttgaaaatttataacccacgaattggtatggatgctttacaggtatat
ccagtgtccagagcaaatgctgatcaaagagcaggaagagcaggacgtactggtcctggt
acctgctacagattgtacacgcaaagacaatatttagacgaactactattgaccggagtt
ccagaaatacagcgtaccaatcttgcaaacactgtattgttactgaagtctttaggtgtt
caagatatattgggttttcattttatggatcctccaccacaagagaatatactaaattct
ctctatcagttgtggatgttaggtgcattggatcatacaggacgtttaacgcctttggga
cgacaaatggcagaattccccttagacccgccacaatgtcagatgcttattgttgcttct
caactcggttgcactgcagatatactaatcatagtttctatgctgtcagtgccttcgata
ttctaccgacccaaaggtcgcgaagaagattctgattcagcgcgagagaagtttcaagta
ccagagtctgaccacctaacatatttaaatgtgtacaatcggtggaaggcgaatggttat
tccaattcttggtgtaacgctcattttattcacgcgaaagctatgcggaaagtaagagaa
gttcgacaacagctggaagaaattctcaaacaacaaaagatggaagttgtaagctgtggc
acggactgggacattgtacggaaatgtatttgttcggcatactttcaccaagcagctcgt
ttgaaaggtattggcgaatacgtgaattgtcgtactggaatgccatgccatcttcatccg
acgtcagctttgttccgtatggggttcacgccagactacgtggtttatcatcaacttgtg
atgactggcaagcagtacatacaatgcgcgactgccgttgatggccactggctagccgaa
ttgggccctatgctttttagcgtaaaggaaactggataaagcggacgagcaaaacgacgt
gcaagacatttacatgaaacggaagggcaaatgaaagaagcggaagaagaaacgaaagct
agggcgcgagaacaacttgaacgtgaacaagtttctatcaggaagtaa
DBGET
integrated database retrieval system
