Bombus pascuorum (common carder bee): 132909402
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Entry
132909402 CDS
T09597
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132909402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpas03041
]
132909402
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132909402
Spliceosome [BR:
bpas03041
]
Complex C
Other components
Step II factors
132909402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
ResIII
SLFN-g3_helicase
AAA_30
AAA_24
T2SSE
ATPase_2
AAA_16
AAA_14
ABC_tran
Sigma54_activ_2
PhoH
ATPase
Sigma54_activat
cobW
NB-ARC
AAA_7
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
132909402
NCBI-ProteinID:
XP_060820187
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All DBs
Position
7:3981797..3984565
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AA seq
864 aa
AA seq
DB search
MPWMMEKIMLLLTFLKNTSKKEMELEAKRQKLLSSQQRQVNKDNELWERNRMLTSGVISS
LDHDDDPDDEGETRVHLLVRNVVPPFLDGRIVFTKQSEPVVPVRDPTSDMAVVARKGSAL
VRAYREEKERKRAQKKDWELAGTHIGNIMGVRDRQKEDKEDPGQETDFKAGQKYALHIRD
EVNGKAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTTQLTQYLHEDGY
SRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTSKDTVIKYMTDGILL
RESLREEDLDQYSVIIMDEAHERSLSTDILFGLLRKVVARRHDLKLIVTSATMDSSKFST
FFGNAATFQIPGRTFPVEVLHAKNPIEDYVDAAVKQVLQIHLQPRSGDVLVFMPGQEDIE
VTCEALKEHLAEIESAPPLTILPIYSQLPSDLQAKIFQRSEEGSRKCVVATNIAETSLTV
DGIVFVVDSGYCKLKIYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGTCYRLYTRRQY
LDELLLTGVPEIQRTNLANTVLLLKSLGVQDILGFHFMDPPPQENILNSLYQLWMLGALD
HTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGREEDS
DSXRERFQVPESDHLTYLNVYNRWKANGYSNSWCNAHFIHAKAMRKVREVRQQLEEILKQ
QKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFRMGFTP
DYVVYHQLVMTGKQYIQCATAVDGHWLAELGPMLFSVKETGXSGRAKRRARHLHETEGQM
KEAEEETKARAREQLEREQVSIRK
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgccttggatgatggagaaaatcatgcttttgctgacgtttctgaagaataccagtaaa
aaggaaatggaattggaagcaaaaagacagaagcttctttcctcacaacagcgacaggta
aataaagataacgaattgtgggaacgtaacagaatgttaacatctggtgtcataagttcc
ttggatcatgatgatgatcctgacgatgaaggagaaaccagagtacatctattggtccgt
aatgttgttccaccatttctggatggtcgaattgtattcactaaacaatcagagcctgtt
gtacctgtacgtgaccctacttctgatatggcagttgtagcaagaaaagggtcggccttg
gtaagagcatatcgcgaagaaaaagagcggaaaagggcgcagaaaaaggattgggaacta
gctggaactcatatcggtaatatcatgggtgtacgtgatagacaaaaagaggataaggaa
gatccaggtcaagaaactgacttcaaagctggacaaaaatatgcgcttcatatacgggat
gaagttaatggaaaagctaaatacaggtccattcaacaccagaggaggagtcttccagta
tttgctgtacgacaagaattactaaatgtaattagagaaaacagcgtagtagttattgtt
ggagaaactggcagtggaaaaacaacacaactgactcaatatctacacgaagacggttat
agtcgctatggcataattggatgtacacaaccaagaagagtagcagctatgtctgtagca
aaaagagtttctgatgaaatggctactgctttaggagacaaagtcggttatgctattcgt
tttgaggattgcacttcaaaagataccgttattaaatatatgaccgatggtatcttatta
agagaaagcttaagggaagaagatttggatcaatatagtgtaattatcatggatgaagct
cacgaaagatctttatctactgatattttatttggtttgctgagaaaggttgtagccaga
cgacatgatctgaaattgatcgtaacatccgctacaatggactctagcaaattttcaaca
ttttttggaaatgctgcgacattccaaattccaggtcgcacatttccagttgaagtacta
cacgcaaagaatccaatcgaagactatgttgatgctgctgtcaaacaagtgttacaaatt
catttgcaacctcgttcaggcgatgtattggtctttatgcccggtcaggaagacattgaa
gttacttgcgaagctttgaaagaacatttagcagagatcgaatctgctcctccacttacc
attctacctatttactcgcaactgccctcggatttacaagctaaaattttccaacgttca
gaggaaggttcgcgaaaatgcgttgtagcaacaaatatagccgaaacttcattaaccgtc
gacggaattgtattcgtcgtggactctggctattgcaagttgaaaatttataacccacga
attggtatggatgctttacaggtatatccagtgtccagagcaaatgctgatcaaagagca
ggaagagcaggacgtactggtcctggtacctgctacagattgtacacgcgaagacaatat
ttagacgaactactattgaccggagttccagaaatacagcgtaccaatcttgcaaacact
gtattgttactgaagtctttaggtgttcaagatatattgggttttcattttatggatcct
ccaccacaagagaatatactaaattctctctatcagttgtggatgttaggtgcattggat
catacaggacgtttaacgcctttgggacgacaaatggcagaattccccttagacccgcca
caatgtcagatgcttattgttgcttctcaactcggttgcactgcagatatactaatcata
gtttctatgctgtcagtgccttcgatattctaccgacccaaaggtcgcgaagaagattct
gattcanngcgcgagaggtttcaagtaccagagtctgaccacctaacatatttaaatgtg
tacaatcggtggaaggcgaatggttattccaattcttggtgtaacgctcattttattcac
gcgaaagctatgcggaaagtaagagaagttcgacaacagctggaagaaattctcaaacaa
caaaagatggaagttgtaagctgtggcacggactgggacattgtacggaaatgtatttgt
tcggcatactttcaccaagcagctcgtttgaaaggtattggcgaatacgtgaattgtcgt
actggaatgccatgccatcttcatccgacgtcagctttgttccgtatggggttcacgcca
gactacgtggtttatcatcaacttgtgatgactggcaagcagtacatacaatgcgcgact
gccgttgatggccactggctagccgaattgggccctatgctttttagcgtaaaggaaact
ggataaagcggacgagcaaaacgacgtgcaagacatttacatgaaacggaagggcaaatg
aaagaagcggaagaagaaacgaaagctagggcgcgagaacaacttgaacgtgaacaagtt
tctatcaggaagtaa
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