Bombus pascuorum (common carder bee): 132910178
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Entry
132910178 CDS
T09597
Name
(RefSeq) non-canonical poly(A) RNA polymerase protein Trf4-1-like
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132910178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132910178
03016 Transfer RNA biogenesis [BR:
bpas03016
]
132910178
Enzymes [BR:
bpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
132910178
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132910178
Transfer RNA biogenesis [BR:
bpas03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132910178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
Motif
Other DBs
NCBI-GeneID:
132910178
NCBI-ProteinID:
XP_060821694
EnsemblRapid:
ENSBPAG00000005851
LinkDB
All DBs
Position
1:31278990..31285086
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AA seq
573 aa
AA seq
DB search
MDPTIGWYQPEQFGPAKDLWLHIWEAEKGLDILTLKNDSSSNVMGMKLQQDFMSLDSLNS
RTGDRMQHNTCSNYYNPSRRKGDNRASTYGMNYNYDALVGEYGGCPWRVPNKHYSKGVIG
LHEEIEDFFAYMCPSNEEHSLRMRVVKRIEQVIYDLWQDSKVEVFGSFRTGLYLPTSDID
LVVIGMWTNLPLRTLERALLDQNIAEPSSIKVLDKASVPIVKLTDKETEIKVDISFNMNN
GVKSAELINSFKKRFPVLEKLVMVLKQFLLQRDLNEVFTGGISSYSLILMTISFLQLHPR
QNAYCSSANLGVLLIEFLELYGRKFNYVKTGIRVKDGGTYISKEEVQRDMIDGHRPSLLC
IEDPLTPGNDIGRSSYGALYVKDAFDWAYYVLSQAVSPLNILVNDANKISILGRIIRVTD
EVIEYRKWIKETFPLPLSEVDSLSSSTASDASTLSAPASDTDSECSRGNSPNASGKGEDR
NKGRHVYNNQHTHHHSQWKKPFKGTAHGNHHHSSRGNYHHRGINNNISGQSKAKHSLHSN
GNNNNSHSPSSRSQTVKRKKQCITPRGTGDCVR
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggatccgactatcggttggtatcaaccggagcagttcggccctgctaaggatttgtgg
ttacacatttgggaagctgagaaaggcctggatattttaacgttgaaaaacgactcgtct
tcgaatgtaatgggaatgaagcttcaacaagactttatgtccttggattctcttaattct
cgtacaggggaccgcatgcaacataatacttgcagcaactattataatccatctcgtagg
aaaggtgataatcgtgctagtacctacggcatgaactacaattacgatgccttagttggc
gaatacggcggttgtccatggcgggtacctaataaacattattcgaagggtgttattgga
ttacatgaagaaattgaagatttttttgcttatatgtgcccctctaatgaagaacatagt
ttacgaatgcgtgttgtcaaaaggatagaacaagtaatatatgatctctggcaagattct
aaggttgaagtatttggcagctttcgcactggtttatatttacctacaagtgatatagat
ttagtagtaataggaatgtggacaaatcttccattacgtactttggaacgtgctttattg
gatcaaaatatagctgaaccatcttctattaaagttttggataaagctagtgtcccaatt
gtaaagttgactgataaagaaactgagattaaagtagatatcagttttaatatgaataat
ggcgttaaatctgcagaattgataaattcttttaaaaagaggtttccagtactggaaaaa
ttagtaatggtattaaaacaattcttgttacaaagagacctgaatgaagtgtttactggt
ggaatttcctcttatagtttaatacttatgactatcagttttctacagttacatcccaga
caaaatgcttattgctcaagtgctaatcttggggtgctgttaatagaatttttggaatta
tatggtaggaaatttaattatgttaaaacaggaattcgtgtaaaagatggtggtacttac
atatcgaaagaagaggttcaaagagatatgatagatggccatcgaccttctttattatgc
atagaagatccacttacaccagggaatgatattggtcgtagtagttatggtgctctgtat
gtaaaagacgcatttgattgggcttattatgtcctctcacaagcagttagtcctttaaat
atcttagttaatgatgcaaataaaataagtatactaggaagaataattcgcgtgacagat
gaagtaatagaatatcgcaaatggattaaagaaacattcccactacctttgagtgaggta
gattcattatcaagttctactgcatctgatgcttcaacactatctgcaccagctagtgat
acggattccgagtgtagtcgtggaaattctcctaatgctagtggaaaaggagaagataga
aataaaggaagacatgtatataataatcaacatactcatcatcattcacaatggaaaaag
ccatttaaaggaactgctcatggtaatcatcatcatagttccagaggaaactatcatcat
cgtggaataaataataatataagcggacaaagtaaagcgaaacactctcttcacagtaat
ggaaataataataacagccatagtccaagttcaagatcacaaaccgttaaacgaaaaaaa
cagtgcattacacctcgtggtactggagattgtgtacggtga
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