Bombus pascuorum (common carder bee): 132910461
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Entry
132910461 CDS
T09597
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132910461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132910461
03041 Spliceosome [BR:
bpas03041
]
132910461
03009 Ribosome biogenesis [BR:
bpas03009
]
132910461
03016 Transfer RNA biogenesis [BR:
bpas03016
]
132910461
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132910461
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132910461
Spliceosome [BR:
bpas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132910461
Complex C
U4/U6.U5 tri-SnRNP related factors
132910461
Ribosome biogenesis [BR:
bpas03009
]
Eukaryotic type
Pre-60S particles
Helicases
132910461
Transfer RNA biogenesis [BR:
bpas03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132910461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132910461
NCBI-ProteinID:
XP_060822163
EnsemblRapid:
ENSBPAG00000010310
LinkDB
All DBs
Position
9:652366..656859
Genome browser
AA seq
1021 aa
AA seq
DB search
MANFTEDLFDVFEETEDIEVIPTPIKSRNEDINESLNEKGTNAESGTKRELENNSDAFIS
KKLRPDPVLEDLNIEELSSRIKIHTIETIESCTHEVAVPPDYEYVSLENKQGKPAKEYKF
VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQK
YREFFEEFEDAGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMR
DKERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQH
YIFPVGGDGIHLVVDEMGQFKEENFNRAMACLHHGDAAKGDTKGRKGGIRPSNAGQTNIF
KMVKMIMERNFAPVIIFSFSKKDCEIYAMQLAKLDLNTLEEKKLVDEVFNNAMDVLNEED
RRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPART
VLFTSSRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKAIVQGK
PDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKAKDLQIAYNAV
TIDRYNHISSYHDIREQLDHLSTEFRSFLTKPEYLLPFLQPGRLVKVKNENEMFDWGIIV
NFKKRSPKNPMKESTVIIIDILLHVSKDSKEGCPVPCHEGEEGDVEVVPVIHTLISQISS
LRLYYPRDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMHIEDEAFKDIVKKIEVLE
EKLYAHPLHKDPDVNTLYEQFLHKEDLSNQLKQAKLELKQAKSILQMDELKCRKRVLRRM
AYCTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNEM
PKCTEELSGPLRQMQDLARRIAKVSTEANLELDEDAYVERFKPYLMDVVYAWCKGATFLQ
ICKMTDIFEGSIIRCMRRSEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttactgaagacttgtttgacgtttttgaagaaaccgaagatatagaagtg
attccaactccaataaagtcaagaaatgaagatataaacgaatcgttaaacgaaaaggga
accaatgcggaaagtggaactaaacgagaacttgaaaataattctgatgcatttatttct
aaaaaattacgacctgatcctgtattggaggatttaaatatagaagaattatcatcacgt
atcaaaatacatacaatagaaacgatcgaatcatgtacacacgaagttgcagttccacca
gattatgaatatgtatccctggaaaataaacaaggcaaaccagcaaaagagtacaaattt
gtattggatccttttcaaaaggaagcaatattatgcatcgagaataatcaatctgtttta
gtttccgcgcatacatcagccggtaaaactgttgttgcagagtatgcaatagcgtgttcg
ttgagagataaacaaagagttatctatacaacacctataaaggcattaagtaatcaaaag
tacagagaattttttgaagaatttgaggatgcaggtttagtaactggagatgttacaatt
aatccaacagcaagtgtgcttatcatgactactgagattttaaggaatatgctttatcga
ggatctgaggtaatgcgggaagttggatgggtaatttttgatgaaattcattatatgcgt
gacaaagaaagaggagttgtttgggaagaaacattaatattattaccagataatgtgcac
tatgtatttctttctgctactatacctaatgccagacagtttgtagaatgggttgcacat
ttacataagcaaccgtgtcatgttgtttatacagattatagaccaactcctttacaacat
tatatattccctgttggaggtgatggtatccacttggttgtagatgaaatgggacaattt
aaagaagaaaattttaacagagcaatggcttgtttgcatcatggtgatgcagctaaaggg
gatactaaaggacgaaaaggaggtattcgtccatcgaatgctgggcaaacaaatattttt
aaaatggttaagatgattatggaaagaaatttcgcacctgtaattatatttagtttttca
aaaaaagattgtgagatatacgcaatgcaattggctaaattagatttgaatacattagaa
gaaaagaagttagtagacgaggtatttaataatgctatggatgttcttaacgaagaagat
cgacgtttgccacaagttgaaaatgtattaccgcttttaagacgaggtataggtattcat
cacggtgggcttttacctattttgaaagaaactgtggaaatattgtttggagaaggatta
ataaaagcactcttcgcgacagaaacttttgctatgggattaaatatgccagcacgaaca
gttctatttacatcatcgcgaaaatttgatggtaaagattttcgttggattacatccgga
gaatatatacaaatgtctggtcgagcaggcagaagaggtttagatgaaaaaggaatagta
atattaatgatagatgaacaagttagccctgtcgttggtaaagcaattgtacaaggaaaa
ccagatcctattaattcagcatttcatttaacttataacatggttttgaaccttttgaga
gttgaagaaattaatccggaatatatgcttgagaggagcttttatcaatttcaaaatcaa
gcatctattccagatctatataacaaggcgaaggatttgcaaattgcatataatgcagtg
actattgataggtataaccatatatcttcttatcatgatatacgtgagcaacttgaccat
cttagcactgaatttaggtcatttttgacgaagccagaatatttacttccatttttacaa
cctggaagattagtaaaagtaaaaaatgaaaatgaaatgtttgattggggtattattgtg
aattttaaaaagagaagtcctaaaaacccaatgaaagaaagcactgttattattattgat
atattacttcatgtttctaaagactctaaggaaggttgccctgtaccttgtcatgaagga
gaagaaggtgatgtggaagtagttcctgttatacacacattaatttctcaaattagttca
cttagattgtattatccaagagatttaagaccatctgataacaggaaaagtgtattaaaa
acgatacaggaagtaaagaaaagatttcctgatggaccaccattattgaatcctattaca
gatatgcatattgaagacgaagctttcaaagatattgttaaaaaaattgaagtattagaa
gaaaaattatatgctcatcctttgcataaggatcctgatgtaaatactctgtatgaacaa
tttttacataaagaagatttaagtaatcagctaaaacaagctaaactagaattaaaacaa
gctaaatcaatacttcaaatggatgaactaaaatgtaggaaacgagtattgcgaagaatg
gcctattgtacagcatcagatgtgatagaactaaaaggcagagttgcttgtgagctgaat
ggagctgatgaattgttaatgacagaaatgatttttaatggtttgtttaattcgctaagt
gttccgcaaatggtagcgttaattagttgttttgtttgtgatgacaaatcaaatgaaatg
cctaagtgtactgaagagttaagtggtccactcagacaaatgcaagatttagctcgaaga
atagcaaaagtatctacagaagctaatttagaattagatgaagacgcatatgtagaacga
tttaaaccgtatttaatggacgttgtatatgcttggtgtaaaggagctacctttttgcaa
atttgcaaaatgacagacatatttgaaggttctatcataagatgtatgcgtcgttcggaa
gaagttcttagacagttatgtcaagcagcaaaaaacattggaaatacggatttagagaat
aaatttagcgaagcaattaaacttataaagcgtgatatcgtttttgctgcatctttatat
ttataa
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