Bombus pascuorum (common carder bee): 132910522
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Entry
132910522 CDS
T09597
Name
(RefSeq) exosome complex component RRP42 isoform X1
KO
K12589
exosome complex component RRP42
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132910522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132910522
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132910522
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
132910522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
132910522
NCBI-ProteinID:
XP_060822271
EnsemblRapid:
ENSBPAG00000001387
LinkDB
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Position
9:complement(607376..609445)
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AA seq
291 aa
AA seq
DB search
MAETVLSSGEKTFILHGIDADFRNDGRQRCEYRSMEIETKLMPQTHGSARLRIGNTDILV
GIKIELDVPHADRSNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTAAYQTRNAFD
LRTLCILPHKKCWKIYVDILILQCGGNLFDAVGITVKAALNSTEIPKITAATLDGGEPDI
ELSDDAYDCIQLDTSNYPIIVTLCKIGDNYIVDPTLEEEVCSASSIVMSVLPNGKVSSVI
KLGYGSIQSNTFIKMLQMGKDIGLQLNESLMKALKKESQLGQRRQILGFLR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaactgttttaagttccggtgaaaagactttcattctccatggaatagatgca
gactttagaaatgatggtaggcaacgatgcgaatatcgatcaatggaaattgaaactaaa
ttaatgccacaaacacatggatcagcaagattacgcataggaaatacggatattcttgtt
ggcattaaaatagaacttgatgtacctcacgctgacagatcaaatgaaggaaaattagaa
ttttttgttgattgttctgctactgcaactccagcatttgaaggaaaaggtggtgatgat
ttagcaactgaaataagtaacattttaacagctgcttatcaaacgcgtaatgcttttgat
ttaagaacattatgtattttacctcataagaaatgttggaaaatatatgttgatattttg
attcttcagtgtggtggcaatctttttgatgcagtaggaattacggttaaggctgcatta
aatagtacagaaataccaaaaattacagctgctactctggatggtggagaaccagatatt
gaattatcagatgatgcttatgactgtatacaattagataccagcaattatccaattatt
gttacactgtgcaaaattggtgataattatatcgtggatccaaccttggaagaagaagta
tgtagtgcaagtagtattgtcatgtctgtattaccaaatggtaaagtttcatcagtgatt
aagttgggttatgggagcattcagtctaatacctttatcaaaatgttgcaaatgggtaaa
gatataggattgcaattaaatgaaagtcttatgaaagcactgaaaaaagaaagtcaactt
ggacaacgaagacaaatattaggatttcttagataa
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