Bombus pascuorum (common carder bee): 132911055
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Entry
132911055 CDS
T09597
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132911055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132911055
Enzymes [BR:
bpas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
132911055
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132911055
mRNA degradation factors
3'-5' decay
Pan complex
132911055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
DNA_pol_A_exo1
DUF7563
PNM8A
Motif
Other DBs
NCBI-GeneID:
132911055
NCBI-ProteinID:
XP_060823373
LinkDB
All DBs
Position
10:13291976..13302763
Genome browser
AA seq
1316 aa
AA seq
DB search
MEYSVLGHYNPSIQPTTDNGVNEQLLWEEPNYVLTGEEYVPATEQFGEEFAGAEFHQTRT
VLADGGDRFGVSTVIFDNVEELMWMGNQGGHVTSYYGPGLQKYTSFQVHASQEIRHIHPI
DEGILILTQSLLRCQLRRGIPIFSHMSQNMIDMQCMLHISPTRLLMGGHQEKIIDFDLTR
GKEIGLVHVGENGCAILRQHSRLICCGNPAGRINFRDPNTLSIEHTFDTHSGSLSDFDVQ
GNYLVTCGFSNCRQGLTVDRFLMAYDLRQMRALSPVATLVCPLLLKFLPSYSSRLAVVAP
SGQMQLLDTIYANAQPPVTCLYQVANSGAILSFDVSSTSQCLCFGDSAGSIHLMSTNTPE
PQFNTFSRPTEFADPVEPLPHISFNDDVTPLSTIPMYYTGQPLLSDWPEEYLRYAYRRTP
PIDPEILRTMKMQGTIGYAPNPQTYRRNQIPYNLEKRRGVVTKLFAGDSRSKTDDGTFVA
IPKRYRKIELKYSRLGYDEFDFDQYNHTNFCGLEATLPNSYCNAMLQLLYYCEPVRIALL
SHSCQREFCLSCELGFLFHMLDTSRGLPCQAANFLRAFRTVPEAAALGLILSDLHPEAKR
KTNLMRLIQSWNRFILHQIHYEVLETKKRQLEEEEAARLKSGPKCPPFVYNEQDFPSILQ
DIGSRYRSHAEERKKRKKQEEDGKYMWITSKDKNSKKSIEENEVRDEETEISRLFGSEQM
HIHRCLKCGQEATKHSIMLLCNLVYPELTHPSEEVPFTSVLTRSLRPEKITPAWCDNCQK
FTPTLQSRQLTKLPQILALNCGLDTQQDKAFWQAQMDIVVQKVLSGKESSPSSSPVPITA
KPCRYGNNCTRIGCRFRHIGRDSENVQTPPVTPPITTSTPQSVTTPPSHLYYSHSWIPHD
IEISLDSNCELFVEKISTPKSDSNESSKTVNEVIVENGQGDNKIQESEISGEEKVVKNHV
DTVRNDDAEKGNKTDENLDKISKVRYSLSAVVCYIDDKSNEDKRNIVALLRVGPNYHERS
AGSAVSQWYIFNDFCISAVTPQEAVWFNLDWKVPCVLHYTAVPAPEPAPFVSPLTYDVFG
EDKCIARSGGTRGITFTPLTSDEMPKTGELVGIDAEFVTLNQEESELRSDGKMSTIKPSH
MSVARITCIRGQGPLEGTPFIDDYISTQEQVVDYLTKFSGIQPGDLDANFSSKHLTTLKS
TYQKLRFLVDNGIMFVGHGLKNDFRVINLVVPPEQVVDTVLLFHLPRHRMVSLRFLTWHF
LGKKIQSETHDSTEDARAALELYRKYKELENSGKLAESLKELYNVGNQLQWKVPDS
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggaatactcggttttaggccactacaacccgtccatacaacccacgaccgataacggt
gttaacgaacaactcctttgggaagaaccaaattatgttttaactggtgaagaatatgta
cctgcaacagagcaatttggagaagaatttgccggggctgaatttcatcagactcgtact
gtacttgctgatgggggggatagatttggagtttccactgtcatctttgacaatgtcgaa
gaactcatgtggatgggaaatcaagggggtcatgtgacatcttattatgggcctggttta
caaaagtacacctcgtttcaagttcatgcctctcaagaaattcggcatattcatccaata
gatgaaggaattttaattttaacacagagtttattgcgatgtcagttgagacgtggtata
ccaatattttcgcacatgtcacaaaatatgatagacatgcaatgtatgcttcacatttca
ccaacaaggttacttatgggcggtcatcaggaaaaaataatcgattttgatctaacaaga
ggaaaagagattggattagtacacgtaggggaaaatggttgtgcaattttaagacagcat
agcagacttatatgctgtggtaatcctgctggaagaatcaatttcagggatccaaataca
ttatcgatagaacatacttttgatactcacagtggttctctcagtgactttgatgttcaa
ggaaattaccttgttacttgtggtttcagtaactgtcgtcagggtttgacagtagatcga
ttcttaatggcatatgacttgagacaaatgagagcattaagcccagtcgcaactttggtg
tgccctcttttattgaagttcctacccagctattccagtcgtttagctgttgtagcacca
tcgggacaaatgcaacttcttgatactatctatgctaatgcacagccacctgtgacatgc
ttgtatcaggttgcaaatagtggagcaatattatcgtttgatgtatcttctacatctcag
tgtctgtgctttggagattcggcaggttctatacatcttatgtctacaaatacacctgag
ccccagtttaatacattttctcgaccaactgaatttgctgatccagttgagccacttcca
catatatcattcaatgatgatgttacaccactaagtacaataccaatgtattatactgga
cagccattgttaagcgattggccagaggaatatttgagatatgcttatagaagaacacca
ccgattgatcctgaaatattgcgtacaatgaagatgcaaggaactataggttatgccccg
aaccctcagacataccgcagaaatcaaataccttacaatttggaaaaacgtcggggagta
gtcacaaaacttttcgctggcgattcacgatcaaaaacagatgacggcacctttgtggcc
atacctaaacgttatcgcaaaatcgagttgaaatattcacgtctcggttacgatgaattc
gattttgatcagtataatcacaccaacttctgcggtctcgaagcaactcttcctaacagc
tattgtaatgctatgttgcagttgctttattattgcgaacctgtaagaatagcgttgctc
tctcactcgtgccaaagagaattttgcctgtcctgcgaactaggatttttgtttcacatg
ttagacacgtccagaggactgccttgtcaggcagccaatttcctacgagctttcagaacg
gttcccgaagcagcagctttgggacttatactcagtgatctccatccggaagccaaaagg
aaaaccaatttgatgcgattgatacagagttggaacaggtttatattacatcagatccat
tacgaagttctggaaacaaagaaacggcaactggaggaagaggaagctgctcgacttaaa
tcaggaccaaaatgtcctccgttcgtttataacgaacaggattttcctagcattttgcag
gacattggctcccgatatagaagccacgcagaagaaaggaagaaaaggaaaaaacaggag
gaggatggtaaatatatgtggatcacatcgaaagacaaaaacagcaaaaaatctatcgag
gagaacgaagtacgagatgaagagacagagatcagtcgtctgtttggatctgaacaaatg
catatacaccgctgtctcaaatgtgggcaagaagctacaaaacattccatcatgttgcta
tgcaacttagtttatccggaattaacgcatccctccgaagaagttccatttacgagtgtt
cttactcgtagtttaagacccgagaaaattacacctgcatggtgtgacaattgtcagaaa
tttacacccacgctccagtctcgacaactgactaaactacctcaaatattggctctgaat
tgtggtttagatacacaacaggataaagcattttggcaagcgcaaatggatatagtcgtt
caaaaagtattaagtggcaaagaaagtagtccatcttcgagtcctgtccccattactgcg
aaaccatgtcgatatggcaacaattgtactcgaattggttgtaggttcagacacattggt
agagattcagaaaatgtacaaacgccaccggttactccacccataacaacttcgacaccg
caatcggtcacaacaccgcctagtcacttatactattctcattcgtggattccacacgat
atagagatttccttggatagcaattgtgaattattcgtagaaaagatcagcactccaaag
agcgactccaacgaaagtagtaaaacggtcaatgaggttatagtagaaaatggtcaaggc
gataataagatacaagaatctgagatctccggagaagagaaagtggttaaaaatcatgtt
gacacagtacgaaatgacgatgcggagaaaggaaacaaaactgatgaaaatttggataag
ataagcaaagttcggtatagtcttagtgctgttgtttgctacatcgatgataagagtaac
gaagataagaggaatatcgttgcgctattgcgagtcggaccaaattatcatgaacgatcg
gctggcagtgcggtgtcgcagtggtacatttttaacgatttttgtatatccgcagtgaca
ccgcaagaagcggtatggttcaatcttgattggaaggttccatgtgtccttcattatact
gctgtacctgcacctgaaccagcaccatttgtcagtccgcttacctatgatgtatttggt
gaagataaatgcatcgctcgcagtggagggacaaggggtatcacgtttaccccattgacg
tccgacgaaatgcctaaaacaggcgaactagttggaattgacgctgaatttgtaacgttg
aatcaggaagaatctgaacttcgtagcgatggaaaaatgtccactataaaaccaagtcac
atgtctgttgcacgtataacttgtatacgtggccaaggtcctctggaaggaactcccttt
atagacgattacataagcactcaagaacaggtagtagattacctgacaaaattcagtggg
attcaaccaggtgatttagacgcaaactttagtagcaagcacttaacaactctaaaatca
acgtaccaaaaactacgatttctcgttgataatgggatcatgttcgttggtcatggcctg
aagaatgattttagagtgataaatttagtcgttccaccggagcaggtcgtagacacagta
ttgctatttcatttacctcgtcatcgtatggtatcgttgcgttttcttacgtggcacttt
ttgggtaagaagattcagtcggaaacacacgattctaccgaagatgccagagctgctctc
gaattgtatcgtaaatacaaggagttagagaattctggaaagctggcggaatcgttaaag
gagctttacaacgttggcaaccaactacagtggaaagttccagatagctga
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