Bombus pascuorum (common carder bee): 132912229
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Entry
132912229 CDS
T09597
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132912229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpas03041
]
132912229
03009 Ribosome biogenesis [BR:
bpas03009
]
132912229
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132912229
Spliceosome [BR:
bpas03041
]
Complex A
U2 snRNP components
U2 related factors
132912229
Complex B
132912229
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
132912229
Ribosome biogenesis [BR:
bpas03009
]
Eukaryotic type
90S particles
Helicases
132912229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
nSTAND3
T2SSE
AAA_7
Flavi_DEAD
ABC_tran
AAA_25
AAA_16
TsaE
Motif
Other DBs
NCBI-GeneID:
132912229
NCBI-ProteinID:
XP_060825467
EnsemblRapid:
ENSBPAG00000012179
LinkDB
All DBs
Position
11:complement(12460769..12465753)
Genome browser
AA seq
718 aa
AA seq
DB search
MSKRRIEVLDPYIKRKADGSATSNSTTIPSTAPKNQVQLNPYTSLPFTPRYHELYKKRIT
LPVFEYRTDFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRRIDNKGVACTQPRRVAA
MSVAQRVSEEMDVPLGVEVGYSIRFEDCSSPKTILKYMTDGMLLREGMSDPMLDAYQVIL
LDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP
VEIFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGP
EVGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVID
PGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNT
YPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDL
GAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFA
HIDGDHLTLLNVYHAFKQNFEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFCLKRTST
DFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNE
FVLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacgaaggatcgaggttctggatccgtatattaaacggaaagcagatggctcg
gccacctccaatagcacaactataccttcgacagcaccaaaaaatcaagttcagctaaat
ccttacactagtctaccttttacaccaagataccatgaactttataaaaagagaatcact
ttaccagtatttgaataccgtactgattttatgaggttattggcacaacatcaatgtatt
gtactcgttggagaaacaggttctggaaaaactacacaaataccacaatggtgtgtagaa
tattcaaggcgtattgacaacaagggtgttgcttgtactcagccaaggagagtagcagct
atgtctgttgcacaaagagtttcagaagaaatggatgttccattaggtgtggaagtaggg
tacagtattcgttttgaagattgtagttctccgaaaactatattgaagtatatgactgac
ggtatgctgttacgtgaaggcatgtcagatcccatgcttgatgcttaccaagtgatatta
ttagacgaagctcacgaacgaactttagccacagacttgcttatgggtgtgttaaaagaa
gtgattaaacaaagaccggatttgaaacttgtgattatgagtgcgactttagatgctgga
aaatttcaacagtattttgataatgcaccattaatgaacgtacctggccgaactcaccct
gttgaaattttttatacacctgagcctgaaagggattacttagaggctgctatcaggaca
gttattcaaattcatatgtgtgaagaagtagcaggagatttgctcctctttttaactggt
caagaggagattgaagaagcttgtaaaagaatcaaaagagagatggataatttaggtcca
gaagtaggtgaacttaaatgtataccactctattctacactgcctccaaaccttcaacaa
agaatctttgaaccagcaccacctacaaagcctaatggtgctattggtagaaaagtagta
gtttcaacaaatattgcggaaacgtcgttaactatcgacggtgtcgtctttgtgatagat
cctggatttgcaaagcagaaggtatacaatcccagaattcgtgtagaatctcttcttgta
tcacccattagtaaagcatctgcgcagcaaagagctggtagagctggtcgtacaaggccc
ggaaaatgtttcagattgtatactgagaaggcatataaaaacgagatgcaagataatact
tatcctgaaattttaagatctaatcttggcagtgtcgtactgcaactgaaaaagcttggc
attgacgacttggttcattttgattttatggaccctcctgcaccagaaactcttatgagg
gctttagaacttcttaattatttggctgctttggacgatgatggaaatctcacagatttg
ggtgctgtaatggcagaatttccattagatcctcaattggcaaaaatgctcattgcatct
tgcaatcataactgcagtaatgagatattgagcattactgctatgttatcagtcccgcag
tgttttgtgaggccaaatgaatcaaaaaaagctgcggatgatgctaaaatgagatttgca
catatcgacggagatcatttaacgttactgaatgtttaccacgcctttaaacaaaatttc
gaagatccacaatggtgttatgataacttcgtcaattaccgatctttaaaaagtggggat
aatgttaggcaacaactaagtagaataatggatagattttgtttaaaacgtacctctaca
gacttcacatcaaaagattattatatcaacattagaaaagcccttgtgaacggtttcttt
atgcaggttgctcatttagaaaggaccggtcattatttgactattaaagataatcaaatt
gtacaacttcatccaagcagttgtttggatcataaacccgaatgggtaatttataacgag
ttcgtgcttacgaccaaaaattatatcagaacagttacagatattaagcctgattggttg
cttaaaatagcaccacaatattatgatttacaaaacttcccacaatgtgaagcaaagaga
caattggaagtgattcaagcgaagttagattcgaaacagtatcaggaaggattctaa
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