Bombus pascuorum (common carder bee): 132914934
Help
Entry
132914934 CDS
T09597
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132914934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpas03041
]
132914934
Enzymes [BR:
bpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132914934
Spliceosome [BR:
bpas03041
]
Complex C
Other components
Step II factors
132914934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
ResIII
T2SSE
AAA_16
AAA_24
ATPase_2
ATPase
Sigma54_activ_2
PhoH
cobW
Sigma54_activat
AAA_7
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
132914934
NCBI-ProteinID:
XP_060830440
LinkDB
All DBs
Position
15:complement(1320916..1324778)
Genome browser
AA seq
1150 aa
AA seq
DB search
MDTLNGSSLYRLEGSDKNQVGGLIIRKKPSDHTFKKPQVSVLGLDKLAKRKRQENSQEVN
SLRSESSSSKSEIKERKYRSYAEETPTHTGGVNTEAQQRLEARLKHQRLSAQDKNRRHNY
KDKDRNRDRDRNRDRYRDWDRERSRSRDSVRDSSRQTPLRFKDEPQTPIFKTKDSTSKSN
WDDDEDEEPRKSSWDHPTPNLYNIKDGRDSVRSEFTPSYKYNPWNKDRKASGATPSISGE
EKDLWDLWEEEQQRLDREWYALDDGENHAFADVSEEYTRKKEMELEAKRQKRLSAQQRQI
NKDNELWERNRMLTSGVISSLDHDDDPDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPV
VPVRDPTSDMALVARKGSALVRAYREQKERKRAQKKHWELAGTHIGNIMGVRDRHKDDKE
DQETDFKAGQKYARHIRDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGE
TGSGKTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFE
DCTSKDTVIKYMTDGILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRH
DLKLIVTSATMDSSKFSAFFGNAATFQIPGRTFPVEVLHAKNPVEDYVDAAVKQVLQIHL
QPRSGDVLVFMPGQEDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEG
GLRKCVVATNIAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGR
AGRTGPGTCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLGFHFMDPPP
QDNILNSLYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVS
MLSVPSIFYRPKGREEDSDSAREKFQVPESDHLTYLNVYNQWKANGYSSSWCNAHFIHAK
AMRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTG
MPCHLHPTSALFGMGFTPDYVVYHELVMTGKEYMQCVTAVDGHWLAELGPMFFSVKETGR
SGRAKRRQAMQHLHEMEGQMKEAEEEMKARAQEQLEREQASIRKKEILTPGIREPGTPAP
YRKTPSRLGL
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatacattaaacgggtcgagtttgtatagattagaagggagtgacaaaaatcaagta
ggaggtttgattattcggaagaaaccctctgatcatacatttaaaaagcctcaggtatct
gtcttgggtcttgacaaacttgcaaaacgaaaaaggcaagaaaattcacaggaagttaac
tcattgagatctgaatcaagttcatcaaaatcagagattaaggaaagaaaatacagatct
tatgctgaagaaactccaactcatactggtggggtgaatactgaggcacaacaaagatta
gaagcacgattaaagcatcaaagattgagtgcacaggacaaaaatcgtagacacaattat
aaggacaaagatcggaatagagatagggatagaaatagggatcgatacagagattgggat
agggaaaggagtagaagcagagacagtgttagagatagtagtagacaaacacccttaagg
tttaaagatgaaccgcaaactccaatatttaaaacaaaggattcaacatctaaaagtaat
tgggatgatgacgaagatgaagaaccaagaaaatccagttgggatcatccaacacccaac
ctatataatattaaagatggtagagacagtgttagaagtgaatttacgccttcgtataaa
tataacccttggaataaagatcgcaaagctagtggtgctacacctagcatatctggggag
gaaaaggacctgtgggacttgtgggaagaagagcaacaaagactggatagagaatggtat
gccttggatgatggagaaaatcatgcatttgctgacgtttctgaagaatatacccgtaaa
aaggaaatggaattggaagcaaaaagacaaaagcgtctttccgcacaacagcgacagata
aataaagataacgaattgtgggaacgtaacagaatgttaacatctggtgtcataagttct
ttagatcatgatgatgatcctgatgatgaaggagaaaccagagtacatctcctagtccat
aatgttgttccaccatttttggatggtcgaattgtattcactaaacagccagagcctgtt
gtacctgtacgtgatcctacttctgatatggcacttgtagcgagaaaagggtcggccttg
gtaagagcatatcgtgaacaaaaagaacggaaaagggcgcagaaaaaacattgggaacta
gctggaactcatattggtaatatcatgggtgtacgtgatagacacaaagatgataaggaa
gatcaagaaactgacttcaaagctggtcaaaaatatgcgcgtcatatacgagatgaagtt
actggagaagctaaatacaggtccattcaacaccagaggaggagtcttccagtatttgct
gtacgacaagaattactaaatgtaattagagaaaacagcgtagtagttattgttggagaa
actggcagtggaaaaacaacacaattgactcaatatctacatgaagacggttatagtcgc
tatggcataattggatgtacacaaccaagaagagtagcagctatgtctgtggcaaaaaga
gtttctgatgaaatggctactgctttaggagacaaagttggttatgctattcgttttgag
gattgcacttcaaaagatactgttattaaatatatgactgatggtatcttattaagagaa
agcttaagggaaggagatttggatcgatatagtgtaattatcatggatgaagctcatgaa
agatctttatctactgatgtcttatttggtttgttgagagaggttgtagccagacgacat
gatctgaaattgatcgtaacatccgctacaatggactctagcaaattttcagcatttttt
ggaaatgctgcaacattccaaatcccaggtcgcacatttccagttgaagtcttacacgct
aagaatccagtagaagactatgttgacgctgcggtgaaacaagtattacaaattcattta
caacctcgttcaggggatgtattggtctttatgcccggtcaggaagacattgaagttact
tgcgaggctttgaaagaacgtttagcagagatcgaatctgctcctccactttccatttta
cctatttactcgcaactaccctcggatttacaagctaaaatttttcaacgttcagaggga
ggtttacgaaaatgcgttgtagcaacaaatatagctgaaacttcattaactgtcgacgga
attgtattcgtcgtggactcgggctattgcaaattgaaagtttataacccacgaattggt
atggatgctttacaagtatatccagtgtccagagcaaatgctgatcaaagagcaggaaga
gcaggacgtactggtcctggtacctgctacaggttatacacgcgaagacaatatttagac
gaactactattaactggagttccagaaatacaacgaaccaatctggcaaatactgtattg
ttactgaagtctttaggtgttcaagatttattaggttttcattttatggatcctccacca
caagataacatattaaattctctgtatcagttgtggattttaggtgcattagatcataca
ggacgtttaacgcctttgggacgacaaatggcagaattccccttagacccgccacaatgt
cagatgcttattgttgcttctcaactcggttgcactgcagatatacttatcatagtttct
atgctgtcagtgccttcgatattctaccgacccaaaggtcgcgaagaagattccgattca
gctcgagagaagtttcaagtaccagagtctgaccacctaacatatctaaatgtttacaat
caatggaaggcgaatggttattccagttcttggtgtaacgctcactttattcacgcgaaa
gctatgcggaaagtaagagaagttcgacaacagctggaagaaattctcaaacaacaaaag
atggaagttgtaagctgtggcacggactgggacattgtacggaaatgtatttgttcggca
tactttcaccaagcagctcgtttgaaaggtattggcgaatacgtgaattgtcgtactgga
atgccatgccatcttcatccgacgtcagctttgttcggtatggggttcacgccagactac
gtagtgtatcatgaacttgtgatgactggcaaggagtacatgcaatgtgtgactgccgtt
gatggccactggctagccgaattgggtcctatgttttttagcgtaaaggaaactggacga
agtggacgagcaaaaagacgacaagccatgcaacatttacatgaaatggaagggcagatg
aaagaagcggaagaagaaatgaaagctagggcgcaagaacaacttgaacgtgaacaagct
tctatcaggaagaaggaaatattgacgccaggtatcagagaaccgggtacacctgctcct
tatcgtaaaactccaagtagattgggattataa
DBGET
integrated database retrieval system
