Bombus pascuorum (common carder bee): 132916510
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Entry
132916510 CDS
T09597
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bpas
Bombus pascuorum (common carder bee)
Pathway
bpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132916510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpas03019
]
132916510
Messenger RNA biogenesis [BR:
bpas03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132916510
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132916510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Maestro_HEAT
DUF3541
Motif
Other DBs
NCBI-GeneID:
132916510
NCBI-ProteinID:
XP_060832567
EnsemblRapid:
ENSBPAG00000007853
LinkDB
All DBs
Position
2:complement(11723293..11732992)
Genome browser
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVTNLNKKNFRDSCQEISVLVQWKGLEADRHLLRSLLSCIDFSTG
ESPELSARDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLNPSPKFFLRLKKA
LGLTLVQEVAFAIALLHSENTEIRTLALEHVQKQLPELIKNYINSETSNRHHEEGLHDSL
PEVLHLILSQAFHSANQFGLSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQTK
IELNMAVNQMDGNSLVELIMELGYGFTNSVEECRSALAGLGAREISPTCAARVLSHMARS
CSSLDDAGGLQSFWGNSGATQDANKEKSSDNAAPTTWNVEVFVQALKEIQSTLSWNEVIV
KLDHAEFVIKDRQGLNLLITGLRLGLQHQGYPPDMFPVELFYRHWDNIEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQISAPITILRQELLSTLMPIFLGNHPNSAVILHHAWHGNTVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALTHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQ
VCAGSVSQECSEAIMTMVQNCSLMLSKSTMSRPPPPGVLRHRGLEPFNPATLGGQLFSSK
QVDPLGNLSSSLASMGLGSSLGPPSSSAFNLSGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGSTTIGGLGRLGPPTGIEKARIPDTSNLFPDMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIIERGLINSYVTLGLALRFVLDALRKPEGSKMYYFGITALDRFKNR
LKDYQTYCDHVRTIQHFTEFPPHLIEYIEYGLQGQEPPTRPQGPVLPKSLAAMLAPVTTP
YKTITTTTITTSTTQAKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLK
LPEVYKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILHIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLSIDVGELKPALYLKDPEKLRNLEYQLSHPNKKSESNTNQQQTQGPIE
ELVGPTTTGTIVPQTAPANTTPSLPTGPPEPRFNYMDISVTGIANISQHISINNNLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQVLTSISTNLKQAFLTAMMGTTPQQKELAEQAANVVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLLKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALLMPKPVTEPTVTAFAANPAVAVATAQQVAAYA
AAVSNDEVGAMLEKLAAEVEVLLAAMGPVAPPPQHAALHSLLDSIILTRRSRDAGAAMSL
LKKAVEGLLDGPTITSGVIDSEIILRYRELHLRILKCLQDPRAYGMQWTNKHITRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNSMATAFAMQLVQLYLIDERQTTH
VAESDLFHTIEILARIAHHRAPPEGILLFRLTNLIESLRVNHDTGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWISMHHNPTHARDPTKAFGIFVHQMNIHGILKT
DDLITRFFKLSTQMCVDSCYRALADTSAAISVVRAKCFHSLDAFVRLIALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDQEMRGTDFQQLPYHRIFIMLFLELCAPEPVLEAINYQV
LTAFCHTLHILRPAKASGFCYAWLDIVAHRVFIGRTLAITPQQKCWGMYAQLLIDLFKYL
ASYLRNTELAKPVITLYRGTIRVLLVLLHDFPEFLCEYHYGFCDVIPLNCTQMKNIVLSA
YPRSMRLPDPFTPNLTVNLLQQAANTPRILTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQDTGFRYNIPLMNALVLYVGTQAISFIRSKGHTPNMSAIAHSAHMDIFQNL
AVDLDTEGRYLFINAIMNQLRYPNTHTNYFSCTLLYLFVEANTQAIQEQITRVILERLVV
NRPHPWGLLVTFVELIKNPTYKFWTHEFVHCAPEIEKLFDSIAHSCRNLKDLESIREPNI
PE
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttacgaattta
aataaaaaaaattttcgagacagctgccaagaaatatcagttctggtgcagtggaagggt
ttggaggcagacagacatttgctgcgctctttactctcgtgtattgacttttccacagga
gagtcaccagaattaagtgcaagagattactttcaagtgcaacttctaaaacaagagtgt
actaatcttcttagcaaaccttcttttatttctaatctgtgctttgctatagaccatcca
tttcatcaacaaaagactttgaacccatcaccaaagttttttttacgtttaaaaaaggca
cttgggttaactctggtacaagaagttgcatttgcgattgcattgctgcattctgagaat
actgaaattcgtacattagctctagagcacgtacaaaaacagctgcctgaattgataaaa
aattatatcaattctgaaacaagcaacagacatcacgaagaaggattgcacgattcgttg
cctgaagttcttcatcttatattgtctcaagcttttcattcagccaatcaatttggcctt
tcatctgaagcaaaagaaaaatttctcaagaatttgaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtacccagacaacggggaaactccgcaaaccaaa
atcgaactaaacatggctgttaatcaaatggatgggaattctctggtagaattgattatg
gaattaggatatggattcactaacagtgttgaagaatgtcgatcagccttagctggttta
ggagctcgagaaatatctccaacatgcgcagcaagggttttaagtcacatggcacgtagc
tgtagtagtcttgatgatgctggaggactacaatcattttggggtaattcaggagctaca
caagatgcaaataaggaaaaatcaagtgataatgctgctcctactacatggaatgttgaa
gtttttgttcaagctttaaaagaaattcaatcaacattatcttggaatgaagtgatagtt
aaactagatcatgcagaatttgttatcaaagatagacaaggattgaatttgttgatcaca
ggattaaggttgggattgcaacatcaaggatatcctccagatatgtttcccgtggaactt
ttttatcgtcattgggataacatagaaggacagttttctctagtgcaacaaattttgaag
tgccctgatatattttgtttcgccgattatccatatcattctgtaactgttgatgtattg
aaagcagcaccagagagtgatagtaaggaagcacaaacttggagatccttaaatgtagtt
gaattactcttgcatatggcagaaagaggactgtatggaccagttcaagaaatatttaaa
tggcccattcaacactgccctgatgttcttgtattagcattattacaaattagtgctcct
attacaatacttagacaagaattacttagtacattaatgcctatttttctcggaaatcat
ccaaattcagctgttattttacatcatgcttggcatggaaatacagttaagataaaatct
attattatgcatgctatggcagaatggtatatacgtggagatcatgatcaaacaagacta
tctcgcattcttgatgttgctcaagacctcaaagcattaactcatttattgactgctcaa
tcatatccatttgttattgatctagcctgtttggcttcaagaagagaatatttaaaatta
gaaaaatggttgactgataaaattagagaacaaggagaagtttttgttactgcttgtgta
aagtttttacaaagacgttgtcctcaagtaatgggacctggtataaaggaagatcttaca
gtaccaaaagcaagtcaacttccacaagaaactctaacaacaatgcttgcttgtttgcaa
gtatgcgctggaagtgtatctcaagaatgttccgaggcaataatgacaatggtacaaaat
tgtagtctaatgttgagtaaaagtacaatgagtagacctccaccaccaggagttttacga
catcgtggattggaaccttttaatccagcaactttgggaggacagttgttttcttcaaaa
caagtggatccacttgggaatttaagttcaagtcttgcatctatgggtttgggttccagt
cttggtccaccaagtagttctgcgtttaatttatcaggtgcacttggacctttagtatca
gcacctggctctccttctcgtctcatgggaccttctccaagtccatttccgatgttacca
ttatcttcacagttgcattcaggaccagttggtacgcaaggaccatctgttttacctgga
agtacaacaatcggaggattaggacgacttggaccaccaacgggcattgaaaaagcaaga
atacctgatacatcgaacttatttcctgatatggcacaaaatgtttccaaagaaattgaa
gatgaagcaaacagttactttcagcgaatatacaaccatccgccacatcctactttatca
attgatgaagttcttgatatgttaaaaaaatttcaagattctggtagtaaaagagagaga
gaagtattcaactgtatgttgcgaaatttatttgaggaatatcgattttttcctcaatac
ccagataaagagttgcaaattacggcacaattattcggaggaattatcgaaagaggattg
attaatagctatgtgacacttggattagctctgagatttgtattggatgcacttagaaaa
ccagaaggcagcaagatgtattactttggcataacagctctggatcggttcaaaaaccgt
ttaaaagactaccaaacatactgtgatcacgtcaggacaattcaacatttcactgagttc
ccaccacatttaattgagtatatagaatatggattacaggggcaggagcctcccacaaga
cctcaaggtccagtcctcccaaaatctttagcagctatgctggcaccagttactacacca
tataaaactattacaacaacaacaataacgacaagcactactcaagcgaaatcatctacg
actccaaccacctctctctcagccagaccttctattgctaatgcaacaaacattgacacg
ttattagtagcaaccgataaagaagaaaaaataacgacacctccagaagctttgcaagat
aaaacagcattcatcttcaataatcttagtcaacttaatttacaacaaaaatgtgacgaa
attcgagaaattgtcacagaagaatattggccttggatggctcagtatttagtaatgaaa
cgtgcaagcatagaattaaatttccatgctttatattcaaattttctggactgtttgaaa
ttaccagaagtgtacaaaatggttactagagaaacatttagaaacataaaggttttatta
cggagtgataaaggaatagcgaatttttctgatcgctcacttttaaaaaatttaggtcat
tggctaggaatgttgactcttggcagaaataaaccgattttacacattgatatagatcta
aaaagtttacttgtcgaagcatatcacaaaggtcaacaagaacttctttatgttgttcca
tttgttgctaaagtacttgaaagttgtgcaaaaagtcgtgtatttcgcccacctaatcct
tggacaatggcaattatgaatgtattagcagaattacatcaagaacctgacctaaaattg
aatttaaaattcgagatagaagtattatgcaaaaatttaagcattgatgtaggtgaatta
aaacctgcgctttatttaaaagatccagaaaaattacggaacttagaatatcagctatca
catcctaataaaaagtctgaatcgaacactaatcagcaacaaacacaaggtcctattgaa
gaattggttggccctactacaactggaactattgttccacaaacagctccagcaaataca
acaccatccttacctactggtccaccagagccgcgttttaattatatggatatttctgta
acaggaattgctaatatttctcaacatatcagcattaataataatttgccattattccaa
acgcacccacatttgaaacagtttgttcgtccagctgttgaaagagcaattcaagaatgg
attcatcctgtagttgatcgatcgatcaaaatagctctaaccactagcgaacaaattgtg
agaaaagactttgcattagatccagaagaagttcgaatgagaacagcggcaagacatatg
gttcgtaatttaactgctggaatggctatgattacttgccgtgatcaagttttgacgtca
attagtacaaatttaaaacaagcttttttaactgcaatgatgggcacaactccacaacaa
aaagaacttgcagaacaagctgctaatgtagtagctgctgataatatggaacttgcatgc
gcatttgtacaaaaaacagctattgaaaaggcaattccagaaatggataaacgtttattg
aatgaaattgaattacgaaaaattgcacggcaagaaggaagaagatattgtgatccatta
cttaaatatcaagctgagagaatgcctgaacaaataagactaaaagttggaggagtgacg
cctcaacaaatggctgtttatgaagaatttgcaaggaatattccaggattcttaccacta
tctgaacgagacacacaagctttgttaatgccaaaacctgttacagaacctactgtaact
gcatttgctgctaatccagcagttgcagtagcgacggcacaacaagttgctgcatatgca
gctgccgtgagtaacgatgaagttggagctatgttagaaaaacttgcagctgaagttgaa
gtattgcttgctgcaatgggtccagttgcacctcctccacaacatgctgctcttcacagt
cttttagattctattatcctaacaaggagatcaagagatgcaggcgctgctatgtcatta
cttaaaaaagctgtagaaggtttattagatggccctaccattaccagcggtgtaatagat
tcagaaattatattgcgatatagagaacttcatttacgtattttaaaatgtttacaagat
ccacgtgcctatggcatgcaatggacaaacaaacacattactcgatgtttaactgagtgt
cgagaagagtttcgatacaacttcgaagctgttgattatcttatcaggtctcacttaatt
agtcttccacagtatgatttagctttggctcaggctatagattccggaaattctatggcg
acagcatttgctatgcagttggtgcaactttatttaattgatgaaagacaaactacacat
gttgccgaatctgacctatttcacacaattgaaatacttgcccgaatagctcatcacaga
gcaccacctgaaggaattttactgtttagactgacaaatctgatagaatcattgcgcgta
aatcatgatacaggagtattagcagacagagctcctgctggtcctacagcgcatattcat
tctggaattctacaggtgagagctcgtgactttgacgatccacctggattgatggaaaag
acggaatatttgttacgcgaatggatctcaatgcatcataatccaacgcacgctcgtgat
cccacgaaagctttcggaatatttgttcatcaaatgaacattcatggaatccttaaaaca
gacgatctcataacaagattctttaaattgagtactcagatgtgtgtcgattcgtgttat
cgtgctttagctgatacaagtgctgcaatatctgttgttcgtgcgaaatgtttccattcg
ttggatgctttcgttcgtttgatcgcacttctggtaaaacattctggtgacagcacaaac
actcatacaaaaattaatttactgaacaaggttttgggaatcgttgctggcgtattactg
caggatcaggaaatgcgaggaactgattttcaacaattgccgtatcataggattttcatc
atgcttttcttggaactttgcgcccctgaacctgtattggaagcaataaattatcaagta
ttaactgctttctgccatacgctacatatacttagaccagccaaagcttcaggattttgt
tacgcttggctggatatagttgcacacagagtttttattggacgtacgcttgcgattaca
ccacaacaaaaatgttggggcatgtatgcgcaacttttaattgatctctttaagtacctt
gcatcataccttcgaaacacggaacttgcaaagcctgttattacattatacagaggaaca
attagagtactattagtcttattacacgattttcctgaatttctttgtgaatatcactat
ggattttgtgatgtaattccacttaattgcacacagatgaaaaatattgttttaagcgca
tatccaagaagtatgcggttacctgatccattcacgccgaatttaacagttaatctgcta
cagcaagcagcaaataccccccgaatattgacaaattttgcgtctatgatacagccatta
agtttcaaaaaagaacttgattcgtatttaaaagcgcgagctccagttactttcctttct
gaattgcgtagtaatttacaagtgtctcaagacactggttttcgctataatattccatta
atgaatgctctcgtactttatgttgggacacaagctatatcttttattcgcagtaaagga
cacacgcctaacatgtctgctatcgcacattctgcacatatggatatatttcaaaacttg
gcagtggatcttgatacagaaggtcgttatttattcataaatgcaattatgaatcagttg
cggtatcctaacacccatacgaattacttcagttgtacacttctgtacttgtttgttgaa
gctaatacgcaagcgatacaagaacaaattacaagagttattcttgaaagacttgttgta
aatagacctcacccatggggtcttctcgttactttcgttgaacttatcaaaaatccaaca
tacaaattctggacgcatgaatttgttcactgtgcaccagaaattgaaaagttattcgat
tcaatagctcattcgtgtaggaacctaaaagatttagaatccattcgggaaccgaatatc
ccagagtga
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integrated database retrieval system
