Butyrivibrio proteoclasticus: bpr_I1940
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Entry
bpr_I1940 CDS
T01292
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase LigT
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bpb
Butyrivibrio proteoclasticus
Brite
KEGG Orthology (KO) [BR:
bpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpb03016
]
bpr_I1940 (ligT)
Enzymes [BR:
bpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
bpr_I1940 (ligT)
Transfer RNA biogenesis [BR:
bpb03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
bpr_I1940 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Imm51
DUF4372
Motif
Other DBs
NCBI-ProteinID:
ADL34674
UniProt:
E0RXU8
LinkDB
All DBs
Position
1:complement(2359133..2359645)
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AA seq
170 aa
AA seq
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MRLFIAICFDDNMLDSLAEIQDDLRRCGVKGSYTPRENLHMTLAFIGEYDDPEQVVEVMQ
KVPLRSFSVKLSGYRPFRDMFFAEFEENESLKEYVKRLRKALLDEEISFDRKKFMPHVTL
IRRADCTKGKAFLPEFQESDAMRVNGISLMKSEQGRHGMVYTEIGYVRAL
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgagactttttatagcaatctgttttgatgacaatatgttggacagccttgcggagatt
caggatgacttgcggcgctgcggagtaaaaggaagctacacgccccgtgagaacctgcac
atgacgctggcctttattggggagtatgacgatcctgagcaggtggtggaagttatgcaa
aaggtgccgctccggtctttttctgtaaagctgagtgggtacaggcctttcagagatatg
ttttttgctgagtttgaagaaaacgagagcttgaaagagtatgtgaaaaggcttaggaaa
gctcttttggacgaagagatttcttttgacagaaagaagttcatgccgcatgtgacgctg
atccggagagcagactgcactaagggcaaagcttttttgccagagtttcaggaaagcgac
gctatgagagttaatggcatttctctcatgaagtctgagcaggggagacatggaatggta
tatacggaaattgggtatgtcagggcattgtga
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