Butyrivibrio proteoclasticus: bpr_I2368
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Entry
bpr_I2368 CDS
T01292
Symbol
rpoC
Name
(GenBank) DNA directed RNA polymerase beta-prime subunit RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpb
Butyrivibrio proteoclasticus
Pathway
bpb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bpr_I2368 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpb03021
]
bpr_I2368 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpb03400
]
bpr_I2368 (rpoC)
Enzymes [BR:
bpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bpr_I2368 (rpoC)
Transcription machinery [BR:
bpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bpr_I2368 (rpoC)
DNA repair and recombination proteins [BR:
bpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bpr_I2368 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADL35101
UniProt:
E0RZ29
LinkDB
All DBs
Position
1:complement(2890863..2894606)
Genome browser
AA seq
1247 aa
AA seq
DB search
MSDSTMNKAINEASNGRGSTLQQVYQPMTFDSIKIGLASPEKIRSWAHRNDNDPHSGEVT
KPETINYRTLKPERDGLFCEKIFGPTKDWECHCGKYKKIRYKGVVCDRCGVEITKSSVRR
ERMGYIELAAPVSHIWYFKGIPSRMGLILDLSPRVLEKVLYFASYIVLDPGETTLEYKQV
LSEKEYQDAREEWGGKFRAGMGAESIKELLLDIDLEKEYTELKEGLDTSSGQKRARIIKR
LEVVEAFRESGNEPAWMIMDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLK
RLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQ
NLLGKRVDYSGRSVIVVGPELKIYQCGLPKEMAIELFKPFVMKELVSRGISQNIKNAKKL
VERLDEQVWDVLEDVIKEHPVMLNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTPFNAD
FDGDQMAVHLPLSVEAQAECRFLMLSPNNILKPSDGGPVNVPTQDMVLGIYYLTQERPGA
LGEGKCFKNVDEAILAYENGYITLQSRVKIRMDKKDADGVVKTGIVESTLGRFLFNELIP
QDLGFVDRSDPENFFKLEVDFMVGKKQLKQIITAIINTHGTFATAEVLDKIKDTGYHYST
RAAMTVSIADMTVPKQKQAMLDEAQATVDKIAMNFRRGLITDEERYRAVVDTWMETDKKL
TEELLAGLDKYNNIYMMADSGARGSNQQIKQLAGMRGLMADTTGRTIELPIKSNFREGLD
VLEYFMSAHGARKGLSDTALRTADSGYLTRRMVDVSQELIIRDVDCCADKEVIPGMTVKA
FMDGKETIEPLKDRITGRYSCETIKDKDGNVIVKKNHMITPSRAAKILSVGVNAKGEPVE
AVKIRTILTCRSHNGICAKCYGANMATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTG
GVAGGDITQGLPRVEELFEARKPKGLAIISELDGKVEIRDTKKKREVIVTNDETGESKAY
LIPYGSRIKVQDGVTIEAGDELTEGSVNPHDLLKIKGIRAVQDYLLREVQRVYRLQGVDI
CDKHIEVIVRQMLKKVRIDESGDTEFLPGTLVDFLDFEDSNEALVSEGKKPAEGKQVILG
ITKAALATNSFLSAASFQETTKVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGMKRYRN
TTLNTDVNFKDPEKLILKKRRRDFDDEFIDVADDVEDDELTVADDEE
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattcaacaatgaataaagcaataaatgaagcttcaaatggcagaggcagcact
cttcagcaggtttaccagccaatgacatttgattcaatcaagattggacttgcatcacct
gaaaagatcagaagttgggcacatagaaacgacaatgatccacatagtggtgaggttacc
aagccagagacaattaactacagaacacttaagccagagagagatggtctgttctgtgag
aaaatatttggacctaccaaggactgggaatgtcactgtggtaagtacaagaagattaga
tataagggcgttgtctgcgatcgttgtggcgtagaaatcacaaagagcagcgttcgtcgt
gagagaatgggatatattgagcttgcagctcctgtatcacatatttggtacttcaaggga
atccctagcagaatgggacttatccttgatctttcacctcgtgtacttgagaaggttctg
tactttgcttcatatatagtacttgatccaggtgagacaacacttgagtacaagcaggtt
ctttctgagaaagagtatcaggatgcaagagaagagtggggcggcaaattccgtgccgga
atgggagctgagtccattaaggaacttcttcttgatattgaccttgagaaagaatataca
gaattaaaagaaggacttgatacatcaagcggacagaagagagcaagaatcatcaagaga
cttgaggttgttgaagctttcagagagtctggaaatgagccagcatggatgatcatggat
tgcattcctgtaatcccaccagatcttcgtcctatggtacagcttgatggtggtcgtttt
gcaacatcagatcttaatgatctttatagaagaattatcaacagaaataatcgtcttaag
agacttcttgatcttggagctcctgatatcatcgttcgtaacgagaagagaatgcttcag
gaagcagtagatgctcttatagataacggtagaagaggaagacctgtaacaggccctggt
aacagagctcttaagtcactttcagacatgcttaaaggtaagtcaggtcgtttccgtcag
aaccttctgggtaagcgtgttgactactcaggacgttcagttatcgtagtaggacctgaa
cttaagatttatcagtgcggacttcctaaggagatggctattgagcttttcaagcctttc
gttatgaaggaactggtttcaagaggaatttctcagaatatcaagaatgccaagaagctt
gttgagcgtcttgacgagcaggtttgggatgtacttgaggatgtaattaaagagcatcct
gttatgctgaaccgtgcccccacacttcacagacttggtattcaggcatttgagcctatc
cttgtagaaggtaaagctattaagcttcatccacttgtatgtacacctttcaacgccgac
ttcgacggtgatcagatggctgtacatcttccactttctgttgaagctcaggcagagtgc
agattccttatgctctcacctaataatattcttaagccttcagatggtggccctgttaac
gttcctacacaggatatggtacttggtatctactaccttacacaggaaagaccaggtgct
cttggtgaaggtaagtgcttcaagaatgtggacgaagctattcttgcttatgagaatggt
tatattactcttcagtcaagagttaagatcagaatggataagaaggatgctgatggtgta
gttaagacaggtattgttgaatctacacttggaagattcctctttaacgagcttattcct
caggatcttggatttgtagacagatcagatccagagaatttcttcaaacttgaagtagac
ttcatggttggtaagaaacagctcaagcagatcattactgctattatcaatacacatggt
acatttgcaactgcagaagtacttgataagatcaaggatactggttatcactattcaaca
cgtgctgccatgactgtttcaattgcagatatgacagtgcctaagcagaagcaggctatg
cttgatgaagcacaggctacagttgataagattgctatgaacttccgtcgtggtcttatt
acagatgaagagcgttaccgtgcagttgttgatacttggatggagacagataaaaagctt
acagaagagcttcttgcaggtcttgataagtacaacaatatttatatgatggctgactct
ggtgcccgtggtagtaaccagcagatcaaacagcttgcaggtatgcgtggacttatggct
gatacaacaggtcgtacaatcgaacttcctatcaagtcaaacttccgtgaaggtcttgac
gttctggagtacttcatgtcagctcatggagctcgtaagggtctgtctgatacagctctt
cgtacagccgattcaggatacctgacacgtcgaatggttgacgtatcacaggaacttatc
attcgtgatgttgattgctgtgcagacaaggaagttattcctggaatgacagttaaggca
ttcatggatggcaaggaaactatcgagccattaaaagatagaattacaggaagatattct
tgtgagactattaaggataaagatggaaatgtaattgttaagaagaaccacatgattaca
ccatctcgtgcagctaagatcctttcagtaggtgtaaatgctaagggagagcctgttgag
gcagttaagattcgtacaatcctcacatgccgttcacacaatggtatttgtgcaaagtgc
tacggagctaacatggcaacaggagaagcagttcaggttggtgaggctgttggtatcatc
gctgctcagtcaatcggtgagcctggtacacagcttacaatgagaacattccatactggt
ggtgttgccggtggtgatatcacacagggtcttcctagagtagaagagcttttcgaggca
agaaaacctaagggacttgctattatttcagaacttgatggtaaggtagaaatcagagat
accaagaagaaacgtgaagttatcgttactaacgatgagactggcgagtctaaggcttat
ctcattccttacggatcaagaattaaagttcaggacggcgttacaattgaagccggtgat
gaacttacagaaggttcagttaacccacatgatcttcttaagattaagggaatccgtgct
gtacaggattatctccttagagaagttcagagagtttaccgtctgcagggtgttgatatc
tgcgataagcatatcgaggttatcgtacgtcagatgctcaagaaggtaagaatcgatgag
agtggtgatacagaattccttccaggaactcttgttgacttccttgattttgaggatagt
aatgaagcacttgtttcagaaggcaagaagcctgctgaaggtaagcaggtaatccttggt
attaccaaggcagctcttgctactaactcattcctctcagctgcttccttccaggaaaca
acaaaggttcttacagatgcagcaatcaaaggtaaggttgatcctcttatcggacttaaa
gagaacgttatcattggtaagctgattcctgcaggaacaggtatgaagagatatagaaat
acaactcttaatactgatgttaatttcaaggatcctgagaaactcattctcaagaagaga
agaagagatttcgatgatgagttcattgatgttgcagatgacgttgaagatgacgagctt
actgtagcagatgatgaagagtaa
DBGET
integrated database retrieval system
