Burkholderia pseudomallei 668: BURPS668_1798
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Entry
BURPS668_1798 CDS
T00481
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bpd
Burkholderia pseudomallei 668
Pathway
bpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BURPS668_1798 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpd03019
]
BURPS668_1798 (rnr)
03016 Transfer RNA biogenesis [BR:
bpd03016
]
BURPS668_1798 (rnr)
Enzymes [BR:
bpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BURPS668_1798 (rnr)
Messenger RNA biogenesis [BR:
bpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BURPS668_1798 (rnr)
Transfer RNA biogenesis [BR:
bpd03016
]
Prokaryotic type
tRNA degradation factors
BURPS668_1798 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
HTH_12
CSD
RcsD_ABL
Motif
Other DBs
NCBI-ProteinID:
ABN82923
LinkDB
All DBs
Position
I:1772448..1774964
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AA seq
838 aa
AA seq
DB search
MSGAPVRLRLPRSRKPNATRKIIDKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEAL
SIKRQEREGFFRRVAAMERDGQIRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQ
DDLFLPNAEMQKVMHNDRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIV
APEDKRISHDILVTQNAKKAKVGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEI
AVRKYGVPHEFGAQALGEAAALPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCE
PAAVGRGEGFRLIVAIADVSHYVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCS
LNPQVDRCVLACDMIINARGDIKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAE
LMPHLQHLYGVYKALFVARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEEC
MLAANVCAADFLKRNKHPGLYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAAL
MAHIRDRPDAQMLQPMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAI
YAILSGKKYTPKSPEGVELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNER
RADEASRDVEAWLKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADY
FQYDEVKNELRGERTGIRYRLSDRVRVQVSRVDLDARKIDFRLVRETPVKAPRPASAVAA
EAGAGGPRVRALPPAEGAARRKKAASAPSAAVKEARAARKKGAASKPAAKKARSRKKY
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgcgcccgttcggctccgcttgccgcggtcgcgcaagccaaacgcaacgaga
aaaatcatcgacaagcccttgagcaagtatccgtatcccatcccgagccgcgaagagatt
ctcggcgtgctgcgcacgagcgacgcgccgcttgcggcgaacgacatcgccgaagcgctg
tcgatcaagcgccaggagcgcgaaggatttttccggcgcgtcgccgcgatggagcgcgac
ggccagatccgtctcgacaagcgcggccattatcaactgacgcatccgtccaacttcgtc
gcgggccgcgtgcaaggccaccgcgacggctacggcttcgtgattcgcgacgacgggcag
gatgatctgttcctgccgaacgccgagatgcaaaaggtcatgcacaacgaccgcgtgctg
gcgcggatcgtcggctatgatcggcgcggccggccggaagggcacgtcgtcgaggtgacc
gagcgggcgaacaagcgcgtgatcgggcgcctcctgaacgagaacggcgcgctcatcgtc
gcgcccgaggacaagcggatcagtcacgacatcctcgtcacgcagaacgcgaagaaggcg
aaggtcgggcaggtcgtcgtcgtcgagctcaccgatttcccgagccgtcattcgcagccg
ctcggccgcgtctgtgaagtgctcggcgatatcgacgatcccggcatggagatcgagatc
gcggtgcgcaagtacggcgtgccgcacgaattcggcgcgcaagcgctcggcgaggccgcg
gcgctgccggacaaggtgcggcccgcggatctgcgctaccgcgtcgacttgcgcgacgtg
ccgctcgtcacgatcgacggcgaggacgcgcgcgacttcgacgacgccgtgtactgcgag
cccgccgcggtcggccgcggcgagggcttccggctcatcgtcgcgatcgcggacgtgtcg
cactacgtgcagccaggcagcccgctcgacgccgacgcggtcgaacgcagcacgtcggtc
tatttcccgcgccgggtgattccgatgctgccggagaagctgtcgaacgggctctgctcg
ctgaatccgcaggtcgatcgctgcgtgctcgcgtgcgacatgatcatcaacgcgcgtggc
gacatcaaggcgtatcagttctatccggccgtgatccactcggccgcgcggctcacgtac
accgaagtggccgcggtgctctcgaacacgaaggggccggaggccgcgcgccgcgccgag
ctgatgccgcacctgcagcacctgtacggcgtctacaaggcgctcttcgtcgcgcggcag
aagcgcggcgcgatcgacttcgacacgaccgagacgtacatcgtctgcaacgcacagggc
aagatcgagcagattctgccgcgccagcgtaacgacgcgcatcggctgatcgaggaatgc
atgcttgccgcgaacgtctgcgcggccgatttcctcaagcgcaacaagcacccgggcctc
taccgcgtgcacgcggggccgacgcccgaaaagctcgagaatctgcgcgcgttcctgcgc
gacatggggctcacgctgggcggcggcgacacgccgcacgcgagcgattacgcggcgctg
atggcgcacatccgcgaccggcccgacgcgcagatgctgcagccgatgctgctgcgctcg
atgcagcaggcggtctacagtccggacaacatcggccacttcggtctcgcgtacgacgcg
tacgcgcacttcacgagcccgattcgccgctatcccgatctgctcacgcaccgcgcgatc
tacgcgatcctgtccggcaagaagtacacgccgaagtcgccggaaggcgtcgagctgaac
accgcgctgtcgccgcgcgcgcgcgcgatgcagcgcgaggacgacgaggcgcgcggccgc
gcgcggtcgaacgcggcgatctgggaggagctcgggctgcactgctcgtccaacgagcgg
cgcgcggacgaagcgtcgcgcgacgtcgaggcatggctcaagtgctatttcatgcgcgac
aagctcggcgaggaatacggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtg
cagctcgatgcgcttttcatcgaaggcctcgtgcatgtgaccgagctcggcgccgattat
tttcagtacgacgaagtcaagaacgaactgcgcggcgagcgcacgggcattcgctaccgg
ctgtccgaccgcgtgcgcgtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgat
ttccgcctcgtgcgcgagacgcccgtgaaggcgccgcgcccggcatcggcggtggcggcc
gaagcgggcgcgggcgggccgcgcgtgcgcgcgctgccgcccgccgaaggcgccgcgcga
cgcaagaaggccgcgagcgcgccgagcgcggcggtgaaggaggcccgggcggcccgcaag
aagggcgccgcgtcgaagccggccgcgaagaaggcgcgttcgcgcaagaagtactga
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