KEGG   Bordetella pseudohinzii: BBN53_01240
Entry
BBN53_01240       CDS       T04945                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
bpdz  Bordetella pseudohinzii
Pathway
bpdz02020  Two-component system
Brite
KEGG Orthology (KO) [BR:bpdz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BBN53_01240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpdz03021]
    BBN53_01240
Transcription machinery [BR:bpdz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BBN53_01240
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 HTH_23 HTH_24 HTH_11 HTH_36 Sigma70_ECF HTH_Tnp_ISL3 HTH_28 HTH_40 HTH_29 GerE
Other DBs
NCBI-ProteinID: ANY14631
UniProt: A0ABM6DAP5
LinkDB
Position
complement(265460..265978)
AA seq 172 aa
MGANVFSASQDDVHRLYTDHHGWLNGWLRKKLGNSFDAADLAQDTFVRVLRHRRELPAVR
EPRAYLVTIAGRLLLNHYRRRSLERAYEEALAALPPERAPAPEQRLLILETLDHVDALLA
ALPAKTRTAFLLAQVDRLPQAAIAERLQLSVRTVQRHILRAYEQCILAMGEA
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgggcgccaacgtgttttctgcctcccaagacgatgtccaccgactctataccgatcat
catggctggctgaacggttggctgcgcaagaagctgggcaatagcttcgatgcggcggac
ctggcccaggacacattcgtgcgcgtgctgcggcaccgccgcgagctgcccgccgtgcgc
gagccgcgcgcctatctggtcaccatcgccggccgcctgctgctcaatcactaccgccga
cgctcgctggagcgggcctatgaagaagccctggccgcgctgccgcccgagcgcgcgccc
gcgcccgagcagcgcctgctgatcctcgagacgctggaccacgtcgacgccttgctggcc
gccctgccggccaagacgcgcaccgccttcctgctggcccaggtcgatcgcctgccccag
gccgccatcgccgagcgcctgcagctgtcggtgcgcacggtgcagcgccacatcctgcgc
gcctacgagcaatgcatcctggcgatgggcgaggcatga

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