Bordetella pseudohinzii: BBN53_02490
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Entry
BBN53_02490 CDS
T04945
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bpdz
Bordetella pseudohinzii
Brite
KEGG Orthology (KO) [BR:
bpdz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bpdz03016
]
BBN53_02490
Enzymes [BR:
bpdz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BBN53_02490
Transfer RNA biogenesis [BR:
bpdz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BBN53_02490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
UPF0158
RNase_P-MRP_p29
Motif
Other DBs
NCBI-ProteinID:
ANY14857
UniProt:
A0A0J6C467
LinkDB
All DBs
Position
complement(525190..527070)
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AA seq
626 aa
AA seq
DB search
MYVFYEDDGSFKAGNILSETDASLQVESESGKRSKIKRANTLFTFASPEPAALMREAAAL
AESIDLAFLWECAPQEEFDAPALAAEYFGHAPSAVEQAALLMRLHGAPVYFHRRGKGRYR
PAPPDILQAALAALEKKQRQAEQQEAWVEDMAQGRLPEEIGQMAETLLVRPDKNTMQWKA
LDAACARLQKSPERLLLELGAWPHALALHKRRFMAVNFPRGAGFPEIILPTVERELPLAD
AEIYSVDDVTTTEIDDALSVTRLSDGRVRVGIHVAAPGLSVTRGSDLDKLARQRLSTVYM
PGDKIPMQPDSVIQTFSLDAGREVPALSLYVTADPASGEIIASETRIERIVVRENLRHNQ
LDTEVSEAALADPDAPLPYGHWLRPLWQLAQALSARRDIIRGKPENNSRVEYSFYLDGNP
DDPNTPVRLVPRQRNAPLDRMVAEYMILANNLWGGLLHQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPKDADLFAIIGAF
DAQYAAWADFQNAMERYWCLRWLRQQNISRSVAHVLRDDLVRLGNAPLVTRVGGLPELER
GAPVEIDIMGMDELSLELDCRYLGPA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtgttttacgaagatgacggcagcttcaaggccggcaacatcctgtcggagact
gacgccagcctgcaggtggagtcggagtcgggcaaacgcagcaagatcaagcgtgccaac
acgctgttcaccttcgcctcgcccgaacccgccgccctgatgcgcgaggcggccgcgctg
gccgagagcatagacctggcctttctctgggaatgcgcgccgcaggaggaattcgacgcg
cccgcgttggcggcggaatatttcggccacgcgcccagcgcggtcgaacaggccgccctg
ctgatgcgcctgcatggcgcgccggtctacttccatcggcgcggcaagggccgctaccgc
ccggcgccgcccgacatcctgcaggcggccctggccgcgctcgagaagaaacagcgccag
gccgagcagcaggaggcctgggtcgaggacatggcccagggcaggctgcccgaggaaatc
ggccagatggccgaaaccctgctggtgcgccccgacaagaacaccatgcaatggaaggcc
ctggacgcggcctgcgcgcggctgcagaaaagccccgagcggctgctgctggagctgggc
gcctggccgcatgccctggccctgcacaagcggcgtttcatggcggtcaatttcccgcgc
ggcgcgggctttcccgagatcatcctgcccacggtggagcgcgagctgccgctggccgac
gccgagatctattcggtcgacgatgtcaccaccaccgagatcgacgacgccctgtcggtg
acccgcctgtccgacggccgcgtgcgcgtgggcatccacgtcgccgcccccgggctgtcg
gtcacgcgcggcagcgacctggacaagctggcgcgccagcgcctgtccacggtctatatg
ccgggcgacaagatccccatgcagccggactcggtcatccagaccttttcgctggacgcc
ggccgcgaagtgcccgccctctcgctctatgtgacggccgacccggccagcggcgagatc
atcgcctccgagacccgcatcgaacgcatcgtggtgcgcgagaacctgcgccacaaccag
ctcgacaccgaggtgtccgaggccgccctggccgatccggacgcccccctgccctacggc
cattggctgcggcccctgtggcagctggcccaggcgctgtcggcgcggcgcgacatcatc
cgcggcaagccggaaaacaactcccgggtggaatacagcttctacctggacggcaacccc
gacgaccccaacaccccggtgcgcctggtgccgcgccagcgcaatgcgccgctggaccgc
atggtggccgaatacatgatcctggccaacaatctgtggggcgggctgctgcaccagcat
ggggtgcccggcatctaccgctcgcagcaggccggccgggtgcgcatgagcacccaggcc
ctgccgcacgaggccatcggcgtgccgcagtacgcctggagcacctcgccgctgcgccgc
tacgtcgacctggtcaatcaatggcagctgatcgccgccgtggagcatggcgtctcggcc
cggctggtggcgcccttcaagcccaaggatgccgatctattcgccatcatcggcgccttt
gacgcgcagtacgccgcctgggccgatttccagaacgccatggagcgctactggtgcctg
cgctggctgcgccagcagaacatcagccgcagcgtggcccacgtcctgcgcgacgacctg
gtgcgcctgggcaatgcccccctcgtgacccgggtgggcggcttgcccgagctggagcgc
ggcgcgccggtcgaaatcgacatcatgggcatggacgagctgtcgctcgagctggactgc
cgctacctcggcccggcctag
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