KEGG   Bordetella pseudohinzii: BBN53_05085
Entry
BBN53_05085       CDS       T04945                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
bpdz  Bordetella pseudohinzii
Pathway
bpdz03030  DNA replication
bpdz03410  Base excision repair
bpdz03420  Nucleotide excision repair
bpdz03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bpdz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBN53_05085
   03410 Base excision repair
    BBN53_05085
   03420 Nucleotide excision repair
    BBN53_05085
   03440 Homologous recombination
    BBN53_05085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpdz03032]
    BBN53_05085
   03400 DNA repair and recombination proteins [BR:bpdz03400]
    BBN53_05085
Enzymes [BR:bpdz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BBN53_05085
DNA replication proteins [BR:bpdz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BBN53_05085
DNA repair and recombination proteins [BR:bpdz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BBN53_05085
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BBN53_05085
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 WD40_4 HHH_5
Other DBs
NCBI-ProteinID: ANY15315
UniProt: A0A0J6C0I9
LinkDB
Position
1128237..1130957
AA seq 906 aa
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVINMLRKLVQDHKAEYAACIFDA
RGKTFRDDLYPDYKSHRPPMPEDLAAQIEPIHAAIRALGWPVLAVEGVEADDIIATLARR
ATEEGLHTVVSTGDKDLAQLVNPQVTLVNTMTGEVLDEAGVVNKFGVPADRIVDYLMLVG
DAVDNVPGVTKVGPKTAVKWLSEFGSIDRLVEQADSIKGVAGNNLREAVARFPLTRQLLT
VKDDCDLGAFLSSPEDLKPREPDRETLGALYDRYGFRSWLRELSGDAERVPTGDARAAEV
AHEAPVEQHYQIITEWSDLEAWMARVDAAALVALDTETTSLDEMQARLVGLSMAVEPGVA
CYIPLAHRGPEAGTQLPLHEVLERLRGWLEDPLRPKLLHHAKYDTHVFANEGVALRGVTE
DTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVDKAGFYAAED
ADFTLQLHRALRPRVAANAGLERIYALELEVSRVLVVIERNGVKVDAAELGRQSNDLGRE
MLSLEQKAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYP
LPQVLLDYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVR
TEAGRRVREAFVAENGGLLLSADYSQIELRIMAHVSDDANLQGAFAAGEDIHRATASEVF
GVPLAEVSSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYM
DDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKLAMVA
VQDWLTAENMRARLIMQVHDELVLEAPEAEVEALRLAVPRLMSEVATLRVPLIAEVGVGR
NWEQAH
NT seq 2721 nt   +upstreamnt  +downstreamnt
atgaaaaaaaccttgttgctggtagacggttcgagctacttgtaccgcgccttccatgcc
atgccggatttgcgcaatgcccagggagaaccgaccggggcgctctatggcgtgatcaac
atgctgcgcaagttggtccaggaccacaaggcagagtatgccgcatgtattttcgatgcg
cgcggcaagacgtttcgggatgatctctatcccgactataaatcgcatcgtccgccgatg
cccgaggatctcgccgcgcagatcgagcccatccacgccgcgatccgcgccctggggtgg
ccggtgctggccgtcgagggcgtcgaggccgacgacatcatcgccacgctggcgcgccgc
gccaccgaggaaggcctgcataccgttgtgtcaacgggtgacaaggacctggcccagctg
gtcaacccccaggtcacgctggtcaacaccatgaccggcgaggtgctggacgaagcgggc
gtggtcaacaagttcggcgtgccggccgaccgcatcgtcgactatctgatgctggtgggc
gacgccgtggacaatgtgccgggcgtgaccaaggtcggacccaagaccgccgtgaagtgg
ctgagcgaattcggctccatcgaccgcctggtcgagcaggccgacagcatcaagggcgta
gccggcaataatctgcgcgaggccgtggcgcgtttccccctgacccgccagctgctgacg
gtcaaggatgattgcgacctgggcgcttttctgtcctcgcccgaggacctcaagccgcgc
gagccggatcgcgagacgctgggcgcgctctacgaccgttatggtttccggagctggctg
cgcgagctgtcgggcgatgccgagcgcgtgcccacgggcgatgcgcgcgccgccgaggtg
gcgcatgaggcgcccgtcgagcagcactatcagatcatcacggagtggtcggacctggaa
gcctggatggcgcgcgtggatgcggccgccctggtcgccctggacaccgaaaccacttcg
ctggacgagatgcaggccaggctggtgggtctgtccatggccgtggagccgggcgtggcc
tgctatatcccgctggcgcaccgggggccggaggccggcacgcaactgcccctgcacgaa
gtcctggagcgcctgcgcggctggctggaagaccccttgcgtcccaagctgctgcatcac
gccaaatacgacacccatgtcttcgccaacgagggcgtggcgctgcgcggtgtcaccgag
gacaccatgttgcaggcctatgtgctggagtcgcatcgcggcgtgggcctgaacgacctg
gcccagcgcttcctggggcgcagcggcgtcaattacgaggacctgtgcggcaagggcgcc
aagcagatcggctttgacgaggtggcggtggacaaggcgggcttctatgccgccgaggat
gccgatttcaccctgcagctgcatcgcgcgctgcgcccgcgcgtggcggccaacgccggc
ctggagcgcatctacgccctggagctggaggtctcgcgcgtgctggtcgtgatcgagcgc
aatggcgtgaaggtcgatgccgccgagctgggccgtcaaagcaatgacctgggccgcgag
atgttgagcctggagcaaaaagcctatgagctggccggccagcccttcaatctcaattcg
cccaagcagctgggtgaaatccttttcgggcgcatgggcctgccggtggtgcgcaagacg
gcgggcggggcgccctcgaccgatgaagaggtcttgtccaagctggcgcaggactatccg
ctgccgcaggtgctgctcgactatcgcggcctgtccaagctgaagtccacctataccgac
aagctgccgcgcatgatcaatccggcgaccggcagggtgcacacccattattcgcaggcc
gcggtcatcaccggacgcctggcgtcctccgatcccaatctgcagaacatcccggtgcgc
accgaggccgggcgccgcgtgcgcgaggccttcgtggccgagaacggcggcttgctgctg
tcggccgactattcgcagatcgaattgcgcatcatggcgcatgtgtccgacgacgccaat
ctgcaaggcgcattcgccgccggcgaggacatccaccgcgccacggcgtccgaggtcttc
ggcgtgccgctggccgaagtctccagcgagcagcgccgcgcggccaaggccatcaacttc
ggcctgatctacggcatgggcgtattcgggctggcgtccaacctgggcatcacgcgcgat
gccgcccaggcctatatcgaccgttatttcacgcgctatccgggcgtggcgcgctatatg
gacgacacccgccgcctggcgcgcgagcagggctatgtcgaaaccgtcttcggccgccgc
ctgcagctgcccgatatccgggccgcctcggggccgcgccgccagggcgccgagcgcgcc
gccatcaacgcccccatgcagggcacggcggccgacctcatcaagctggccatggtggcc
gtgcaggattggctgacggccgagaatatgcgcgcccgcctcatcatgcaggtgcacgac
gaactggtgctcgaagcgcccgaagccgaggtcgaggccctgcgcctggccgtgccgcgc
ctgatgagcgaggtggcgacgctgcgcgtgccgctcattgccgaggtcggcgtgggccgc
aactgggagcaggcgcactga

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