Bordetella pseudohinzii: BBN53_05885
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Entry
BBN53_05885 CDS
T04945
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bpdz
Bordetella pseudohinzii
Pathway
bpdz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpdz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBN53_05885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpdz03019
]
BBN53_05885
03009 Ribosome biogenesis [BR:
bpdz03009
]
BBN53_05885
Enzymes [BR:
bpdz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBN53_05885
Messenger RNA biogenesis [BR:
bpdz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBN53_05885
Ribosome biogenesis [BR:
bpdz03009
]
Prokaryotic type
rRNA processing factors
BBN53_05885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
DUF4672
Motif
Other DBs
NCBI-ProteinID:
ANY15465
UniProt:
A0A0J6C950
LinkDB
All DBs
Position
complement(1303683..1306709)
Genome browser
AA seq
1008 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSYFKDGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRSVEELQ
WDLAYLMQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDVTWSPREHEVKARPEALVKGITPAQPAPVSA
PAPAAPAKAAEGAGFGGLFKRLINWLSGGGEQAKPADKPAEQAKRSGAGGNRNKRAHDGQ
ERRGERHGSDRNRNRRGGDGEGLEQRHVRGGRRQDEARGETARGENARGEAQRGEPRAES
RNESRNDARAEARQARNADAQAPRPSAPETGDESTPRSGRNRRGRGRGRREEGAAETMSE
QETMVAALAETVASALPSTAPETAAAEVEATEADNEAPVGAEGEGQADPERKRRRRRSRR
GRRSQEEGATLDADGQPIEAGDDAEEGDSARNALIPAPAYGVTAASEPVKVEAAEVQATA
DAAAASEAAAPVAPAEPQAPVAEPQAPAAQAPVAAEPVQTAPASPAAEPIVAAEPALAAE
PPAAVEPEPAPAAVETAAAPAPEPVQTAPAQPMPAVASPAAAPIVVGDAALNAVVQAAGL
TWVQTDPARHAQSQARSAADQAPVRLGRERKPVAQVSSVPLVQVETRH
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgtcgcaattgtcgat
gggcaaaagctcatcgaccttgatatcgaaaccgccggccgcgaacagcgcaaaggcaac
atctataaaggcgtcatcacccgcatcgaacccggccttgaagcctgcttcgtcaattac
ggcgaagaccggcacggctttctgcccttcaaggaagtggcccgcagctacttcaaggac
ggcgtcgacgtccgcagcgcccgcatccaggacgcgctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaagaagagcgtggcaacaagggcgccgccctgaccaccttcatctcg
ctggcgggccgctatctggtcctgatgcccaacaacccccgtggcggcggcgtctcgcgc
cgcgtcgagggcgaagaccgccaggaactgcgcgacacgatggagcagctcgatgtgccg
caaggcatgagcatcatcgcccgcacggccggcatcggccgcagcgtggaagagctgcaa
tgggacctggcctacctcatgcaactctggacggccatcgatggcgccgcgcgcgacaac
gccgcgcccatcctgatctatctggagtccagcctggtcatccgggccatccgcgactat
ttctcgcctgaaatcggcgaaatcctgatcgataccgacgagatcgccgatcaggccacg
gccttcatgagcgtcgtgatgccggacaacgtccagcgcgtcaaacgctatcgcgacgac
atccccctcttctcgcgcttccagatcgaacaccagatcgagacggcctattcgcgcacg
gtgcagctgccttcgggcggcgccgtggtgatcgaccacaccgaagccctggtcgccgtc
gacgtgaactcggcccgctccacgcgcggcgccgacatcgaggaaaccgccctgcgcacc
aatctggaggccgccgacgaagtggcccgccagctgcgcctgcgcgacctcggcggcctg
atcgtgatcgatttcatcgacatggaagacagcaagaaccagcgtgctgtcgaacagcgc
ctgcgtgatgcgctgcactttgaccgcgcccgcgtgcaaatgggcaagatctcgcgcttt
ggcctgatggagctgtcccgccagcgcctgcgcccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcat
gtgctgcgcctgctgcaagaagaagccatgaaggaaaacaccgccgccgtgcacgctcaa
gtgccggtggacgtggccaccttcctgctgaacgaaaagcgcgccgatatcgccaagatg
gaagcccgcctgaaggtcaacctggtgctcatcccgaacaagcacctggagaccccgcat
caccatatcgagcgcctgcgccacgacgacccgcgcctggaagagaccaagaccagcttc
gagctggccgaggcccccgccaccgacgtcacctggagcccgcgcgagcatgaggtcaag
gcgcgccccgaggccctggtgaagggcatcaccccggcgcagcccgcgccggtgtccgcc
cccgcgcccgccgccccggccaaggccgccgaaggcgccggctttggcggcctgttcaag
cgtttgatcaactggctgtccggcggcggcgagcaggccaagccggccgacaagccggcc
gagcaagccaagcgcagcggcgccggcggcaatcgcaacaagcgtgcccacgacggccag
gaacgccgtggcgagcgccatggttccgaccgtaaccgcaaccgccgcggcggcgatggc
gaaggcctggagcagcgccatgtgcgcggcggccgccgccaggacgaggcgcgtggcgag
acggcgcgcggcgagaacgcccgcggcgaagcgcagcgcggcgagccgcgtgctgaatcg
cgcaacgaatcgcgcaatgacgcacgcgccgaagcgcgccaggcccgcaacgccgatgcc
caggccccgcgtccctccgccccggaaaccggcgatgagtccacgccgcgcagcggccgc
aatcgccgtggccgcggccgcggccgacgcgaggaaggcgccgccgaaacgatgagcgaa
caggaaaccatggtggccgcattggctgaaaccgtggcgtcggccctgccgagcacggct
cccgagactgccgccgccgaggtggaagccaccgaagccgacaacgaagcccctgtgggc
gccgaaggcgaaggccaggccgatccggagcgcaagcgccgccgtcgccgcagccgccgc
ggtcgccgcagccaggaagaaggcgcgacgctggatgccgatggccagcccatcgaagcc
ggcgatgacgcggaagaaggcgacagcgcccgcaacgcgctgatcccggcgccggcctac
ggcgtgaccgccgcctccgagccggtcaaggtggaggccgccgaggttcaagccacggcc
gacgccgccgcggccagcgaagccgccgcccccgtggcgcccgccgaaccgcaagcgccc
gtggctgagccccaagcgcccgcggcgcaggcgcccgttgccgccgagccggtgcaaacc
gcccctgcttcgccggccgccgagccgatcgttgccgcggagccggcccttgcggccgaa
ccgccggccgccgttgagcctgagcctgccccggccgcggtcgaaacggccgccgcgccc
gcccccgaaccggtgcaaaccgcgccggcgcagcccatgccggccgtcgccagcccggcc
gccgcgcccatcgtggtcggcgatgcggccttgaatgccgtggtccaggccgccggcctg
acctgggtccagacggatccggcgcgccacgcgcaatcccaggcgcgcagcgcggccgac
caggcgccggtgcgcctgggccgcgagcgcaagcccgtggctcaagtgtcgtcggttccc
ctggtccaggtggaaacccgccactaa
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