Bordetella pseudohinzii: BBN53_07700
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Entry
BBN53_07700 CDS
T04945
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bpdz
Bordetella pseudohinzii
Pathway
bpdz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpdz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBN53_07700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpdz03019
]
BBN53_07700
03016 Transfer RNA biogenesis [BR:
bpdz03016
]
BBN53_07700
Enzymes [BR:
bpdz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BBN53_07700
Messenger RNA biogenesis [BR:
bpdz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBN53_07700
Transfer RNA biogenesis [BR:
bpdz03016
]
Prokaryotic type
tRNA degradation factors
BBN53_07700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Rrp44_S1
HVO_A0261_N
MarR_2
HTH_IclR
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ANY18228
UniProt:
A0ABM6DL49
LinkDB
All DBs
Position
1700911..1703331
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AA seq
806 aa
AA seq
DB search
MPDAPPDFDPDVPSREQILNALRTAGAPLSPAELAQRMGVEREATMVGFERRLAAMERDG
QLLPNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIFLSPREMLKVLHGDRVLV
KPSGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVVPEDQRIKHDILIPPGDTNGAQ
HGQVVSVEIIEQPTRHTQPLGKVFEVLGEIDDPGMEIEIAVRKFDVPVEFSEAARKQAAR
LPDSVRKSDLKERVDLRDVPLITIDGEDARDFDDAVYCQPVDLGTGQRKRPGWRLLVAIA
DVSHYVRPGDALDDDAAERGTSVYFPRRVIPMLPESLSNGLCSLNPNVDRLVLVCDMVIP
ATGAKAGTVSAYQFYNAVMHSHARTTYTSIWEALQQPGGPAAHALGKLLPDVQHLYELYQ
LLAQQRKKRGAIDFETVETRIVCNELGRIEQIVPMVRNDAHKLIEECMLAANTCAADFMQ
RSKHPGLYRIHEGPTPERLQALRDFLRTMALSLGGGDTPTAKDYGEFLDSVRARPDFPLL
QTMSLRSMQQAVYSPDNMGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKALLAGQRYVPEL
LSQPMVIGRSQREHEHAIWEKLGLILSASERRADEASRDVEAWLKCWFVKERVGEDFSGT
VTGVASFGIFVTLDTLHVEGLVHVSELGSEYFQFNDSLHELRGERTGMRYRLTDKVQVQV
SRVDLEARRIEFRLVKGTSYEALRKQSARNPDEPRRVKKAAAPKPAALKGQTAKQRRAEA
KKANKVPATPAKRAGAPAKKAVRGRH
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgatgctccgccggatttcgatccggacgtcccgtcgcgcgaacagatcctcaat
gccttgcgcacggccggcgcgccgctgtcgcccgccgaactggcccaacgcatgggcgtc
gagcgtgaagcgaccatggtcggtttcgagcgccgcctggccgccatggagcgcgacggc
caattgctgcccaaccgcaagggcgtgctgctgctggccaccaagctggactttgtcgcc
gggcgcgtgcagggccaccgcgacggtttcggtttcctggtgcgcgatgacggcggcccg
gatatcttcctgtcgccgcgcgagatgctcaaggtgctgcacggcgaccgcgtgctggtc
aaaccgtcgggcgagtaccgcggcaagcccgagggcaccatcgtcgaggtgatcgagcgc
cgcaccaacaagctggtggggcgtttcctgcacgagcatgggctgtccatcgtggtgccg
gaagaccagcgcatcaagcacgacatcctgatcccgccgggcgacaccaatggcgcgcag
catgggcaggtggtgtcggtggaaatcatcgagcagccgacccgccatacccagccgctg
ggcaaggtgttcgaggtgctgggcgagatcgacgaccccggcatggaaatcgaaatcgcg
gtgcgcaagttcgatgtcccggtcgagttctccgaggccgcgcgcaagcaggccgcgcgc
ctgcccgacagcgtgcgcaagagcgatctgaaggagcgcgtggatctgcgcgatgtgccg
ctgatcaccatcgatggcgaagacgcgcgcgatttcgatgacgccgtttattgccagccg
gtggacctgggcacgggccagcgcaagcgtcccggctggcggctgctggtggccatcgcc
gacgtcagccattatgtgcgtccgggcgacgccctggatgacgacgccgccgagcgcggc
accagcgtgtacttcccgcgccgcgtcattcccatgctgcccgagtccctgtccaacggg
ctgtgctcgctcaatcccaacgtggaccgcctggtgctggtctgcgacatggtgatcccc
gccacgggggccaaggccggcacggtctcggcctatcagttctacaacgccgtcatgcat
tcgcatgcgcgcaccacctacaccagcatctgggaagccctgcagcagcccggcggtccg
gccgcccacgcgctgggcaagctgctgccggacgtgcagcacctctacgagctctatcag
ctgctggcgcagcagcgcaaaaagcgcggcgcgatcgacttcgaaaccgtcgagacgcgc
attgtgtgcaatgagctgggccgcatcgaacagatcgtgcccatggtgcgcaacgacgcc
cataagctcatcgaagagtgcatgctggccgccaacacctgcgcggccgacttcatgcag
cgcagcaagcaccccggtctgtaccgcatccacgaaggccctacgcccgagcgcctgcag
gccttgcgcgatttcctgcgcaccatggcgctgtccctgggcggcggcgacacgcccacg
gccaaggactacggcgagtttctcgattcggtgcgcgcacgcccggatttcccgctgctg
cagaccatgagcctgcgctccatgcagcaggcggtctacagcccggacaatatgggccac
ttcggcctggcctatccggcctattcgcacttcacctcgcccatccggcgctatcccgac
ctgctcacgcatcgcgtcatcaaggccttgctcgccgggcagcgctatgtgcccgagctg
ctgtcccagcccatggtcatcgggcgcagccagcgcgagcacgagcatgccatctgggaa
aagctcggcctcatcctgtcggccagcgagcggcgcgccgacgaggcttcgcgcgatgtc
gaggcctggctcaagtgctggttcgtcaaggagcgggtcggcgaggatttcagcggcacc
gtcaccggcgtggccagcttcggtatcttcgtgacgctggacaccctgcacgtcgagggt
ctggtgcatgtctcggagctgggcagcgagtacttccagttcaatgattcgctgcacgaa
ttgcgcggtgagcgcacgggcatgcgctaccgcctgaccgacaaggtgcaggtgcaggtc
tcgcgcgtggacctggaggcgcgccgcatcgagttccggctggtcaagggcacgagctac
gaagccttgcgcaagcagagcgcgcgcaatccggatgagccccggcgcgtcaagaaggcc
gccgcgcccaagccggccgcgctcaaggggcagacggccaagcagcgccgcgccgaggcc
aagaaggccaacaaagtgccggccacgccggccaagcgggcaggggcgcccgccaagaag
gcggtgcgcgggcgccattaa
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