Bordetella pseudohinzii: BBN53_16950
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Entry
BBN53_16950 CDS
T04945
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bpdz
Bordetella pseudohinzii
Pathway
bpdz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpdz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBN53_16950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpdz03019
]
BBN53_16950
Enzymes [BR:
bpdz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBN53_16950
Messenger RNA biogenesis [BR:
bpdz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBN53_16950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
LBP_BPI_CETP_C
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ANY18409
UniProt:
A0ABM6DKL4
LinkDB
All DBs
Position
complement(3673044..3674408)
Genome browser
AA seq
454 aa
AA seq
DB search
MLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANSSA
SPARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVL
VATPGRLLDHVEQKNVNLGQVGILVLDEADRMLDMGFLPDLERIIRLLPPQRQGLLFSAT
FSNEIRKLGRSYLNQPIEIEVAARNATADTVTQIAYQMSGEAKRAAVVHLVKSRGLKQVI
VFSNTKIGTARLARQLERDGVKAESIHGDKSQADRMKALEAFKAGELEVLVATDVAARGL
DVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERYLLDIEKLIKRQVP
RGKLEIPAELLAHSHGRGGERGSSREGREGGHRESREGGRDSNRRAPRQPVDDFFYKPYV
PAASSAEAEAEAPRAPATGKRQLAVLLGGSRKPN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ctgctcaagtccattgccgagacgggctacaccagccccacgcctatccaggcgcaggcg
attccggtcgtcgcggaaggacgcgacgtcatgggagccgcgcagaccggcaccggcaag
acggccgcgttcacgctgcccattctgcatcgcctgatgccgctggccaatagcagcgca
tcgcccgcccgccatccggtgcgcgccctgatcctgacgcccacccgcgagctcgccgac
caggtctacgaaaacgtcaagcgctacagcctgcatacgccgctgcgttcggcggtggtc
tttggcggggtggatatcggtccgcagaaagaggccttgcgccgcggctgtgaagtgctg
gtggccacgcctggccgcttgctcgaccacgtcgagcagaaaaacgtcaatctgggccag
gtcggcatcctcgtgctggacgaggccgaccgcatgctggacatgggttttctgcccgac
ctggaacgcatcatccgtctgctgccgccgcaacgccagggcctgctgttttccgccacc
ttcagcaacgagatccgcaagctcggccgctcctatctcaaccagccgatcgagatcgag
gtggcggcgcgcaatgccaccgccgacacggtcacgcagatcgcctaccagatgtcgggc
gaagccaagcgcgccgccgtcgtgcatctggtgaagtcgcgtggcctgaagcaggtcatc
gtgttctccaataccaagatcggcacggcccgcctggcgcgccagctggagcgcgacggc
gtgaaggccgagtccatccacggcgacaagtcgcaggccgaccgcatgaaggcgctcgaa
gccttcaaggccggcgagctggaagtcctggtggccaccgatgtggccgcgcgcggtctg
gatgtcgcgggcgtgccctgcgtcatcaactatgacctgccgtacaacgccgaagactat
gtgcatcgtatcggccgcacgggccgcgccggggccagcggcgaggccatcgcgctgttc
acgcccgaagaagaacgctatctgctggatatcgagaagctgatcaagcggcaggtgccg
cgcggcaagctggagattccggccgaattgctggcgcacagccatggccggggcggcgaa
cgcggcagcagccgcgaaggccgcgagggcggccatcgcgaaagccgtgaaggcggacgc
gacagcaaccgccgcgcgccgcgccagccggtcgatgattttttctacaagccctatgtg
cccgccgcgtcgagcgccgaagccgaggccgaggcgccgcgcgcgcccgccacgggcaag
cgccagctggccgtgctgctgggcggcagccgcaagcccaactga
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