Bordetella pseudohinzii: BBN53_20630
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Entry
BBN53_20630 CDS
T04945
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpdz
Bordetella pseudohinzii
Pathway
bpdz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpdz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBN53_20630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpdz03021
]
BBN53_20630
03400 DNA repair and recombination proteins [BR:
bpdz03400
]
BBN53_20630
Enzymes [BR:
bpdz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBN53_20630
Transcription machinery [BR:
bpdz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBN53_20630
DNA repair and recombination proteins [BR:
bpdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBN53_20630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
ANY18082
UniProt:
A0A0J6BX14
LinkDB
All DBs
Position
complement(4442464..4446705)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKPDWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGRGEGIFFADVAEVQRAYDNG
EVELQTRITVRLKEHERDEQGEWQPVIRRHETTVGRALLSEILPRGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMEDMLIPKAKEVILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEVDCGTSHGYSMKALVEGGEVIEPLRDRIL
GRVAAIDIVNPDTQETAITAGTLLDEDLVDLIDRLGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSHVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGELAIYDDNGRERERHKIPYGATVLVGDGEAVKAGTRLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKTVMRPQIKL
VNENGEDVRIAGTDHAVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNITDPGDTSFIPGEQVERSELLNENDRVVAEEKRPAHYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHLARKDKEALEAAERE
AARQQANPFEDVPVSAGIDSDGPLSSDDETPAE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctcttcaagcaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcctcgccggagaagatccgttcgtggtcctacggcgaagtccgcaag
cccgagacgatcaactaccgtaccttcaagcctgagcgcgatggtttgttctgcgccaag
atctttggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgaaaaatgcggcgtcgaagtcaccgtcgccaaggttcgccgtgaa
cgcatgggccacatcgagctggccagcccggttgcgcacatctggttcctcaagagcctg
ccgtcgcgcctgggcatggtgctcgacatgacgctgcgcgacattgagcgcgtgctctac
ttcgaagcctggtgcgtgatcgaacccggcatgacgccgctcaagcgcggccagatcatg
tcggacgacgatttcctggccaagaccgaagaatacggcgacgacttccgtgccctgatg
ggcgccgaagccgtgcgcgagctgctgcgcacgatcgacatcgaccgcgaagtcgagacg
ctgcgcggcgaactcaaggccaccagctccgaagccaagatcaagaagatctccaagcgc
ctgaaggtgctcgaaggcttccagaagtcgggcatcaagcctgactggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgatctctatcgtcgcgtcatcaaccgcaacaaccgcctcaag
cgcctgctcgaactgaaggcgcccgagatcatcctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggccgtttccgccag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcatcagtgcggcctgcccaagctgatggcgctggagctcttcaagcccttc
atcttcaatcgtctggagatgatgggtctggccacgaccatcaaggcggccaagaagctg
gttgagagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctcaaccgcgcgccgacgctgcaccgcctgggcatccaggctttcgagccggtc
ctgatcgaaggcaaggccatccagctgcatccgctggtttgcgccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctctcgctggaagcccagctcgaggcg
cgcacgctgatgttggcctcgaacaacgtgctgttcccggccaacggcgaaccgtccatc
gtgccgtcgcaggatatcgtgctgggtctgtattacacgacccgcgagcgcatcaacggc
cgcggcgaaggcatcttcttcgccgacgtggccgaagtccagcgcgcctatgacaacggc
gaagtcgagctgcagacccgcatcaccgtgcgcctgaaggagcacgagcgcgacgagcag
ggcgaatggcagcccgtcatccgccgtcacgagacgacggtcggccgtgccttgctgtcc
gagatcctgccgcgcggcctgcccttcacggtcctgaacaaggccctgaagaagaaagaa
atctcgcgcctgatcaaccagtcgttccgccgttgcggcctgcgcgacacggtgatcttc
gccgacaagctgatgcaatccggtttccgcctggcgacccgcggtggtatttccatcgcc
atggaagacatgctgatccccaaggccaaggaagtcatcctggccgaagccagccgcgaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacctcgcaagagcgctacaac
aacgttgtggacatctggggcaaggcgggcgacaaggtcggcaaggcgatgatggaacaa
ctggccaccgagccggtcgtgaaccgtcatggcgaagaagtgcgccaggaatcgttcaac
tccatctacatgatggctgactcgggcgcccgcggttcggccgcccagatccgccagctg
gccggtatgcgcggcctgatggccaagccggacggctccattatcgaaacgcccattacc
gccaacttccgcgaaggcttgaacgtactccagtacttcatctcgacgcacggcgcgcgt
aagggtctggccgatacggcactgaagaccgccaactcgggttacctgacccgccgtctg
gtcgacgtgacgcaggatctggtcatcaccgaagtggattgcggcacctcgcatggctac
tcgatgaaggccctggtcgaaggcggcgaagtcatcgaaccgctgcgcgaccgtatcctc
ggccgcgtggccgccatcgacatcgtcaaccctgatacccaggaaaccgcgatcaccgcc
ggcacgctgctggacgaagatctggtcgacctgatcgatcgcctgggcgtggacgaagtc
aaggtccgcacgccgctgacctgcgaaacccgtcatggcctgtgcgcgcactgctatggc
cgcgacctgggccgcggttcgcacgtcaacgtcggtgaagccgtcggcgtcatcgccgcc
cagtccatcggtgaaccgggcacgcagcttacgatgcgtaccttccacatcggtggcgcg
gcctcgcgttcggccctggccagcgccgtggaaaccaagtccaacggtacggtgggcttt
gccagcacgatgcgttacgtgaccaacgccaagggcgagcgcgtggcgatctcgcgttcc
ggcgaattggccatctacgacgacaacggccgcgagcgcgaacgccacaagatcccctac
ggcgcgaccgtgctggtgggcgacggcgaagccgtcaaggccggcacccgtctggcgacc
tgggatccgctgacccgtccgatcgtgtccgaatacggcggcgccgtgcgcttcgagaac
atcgaagagggcgtgaccgtggccaagcaggtcgacgaagtcaccggcctgtccacgctg
gtcgtgatcacgcccaagacgcgcggcggcaagaccgtcatgcgtccgcagatcaagctg
gtcaacgaaaacggcgaagatgtgcgcatcgcgggcaccgaccatgcggtgaacatctcc
ttcccggttggcgcgctgatcacggtgcgtgatggccagcaggtggcggtcggcgaggtc
ctggcgcgtattccgcaagaatcgcaaaagacccgcgacattaccggcggtctgccgcgc
gtggccgaactgttcgaagcccgttcgcccaaggacgccggcatgctggccgaagtcacc
ggcacggtttcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtgagccacgagttcctgattccgaaggaaaagcaggttctggtgcacgacggc
caagtggtcaacaagggcgaaatgatcgtcgacggtccggccgacccgcacgacatcctg
cgtctgcagggtatcgaaaagctggcgacctacatcgtcgatgaggtgcaggacgtctac
cgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgtcagatgctg
cgccgtgtgaacatcaccgatccgggcgatacctccttcatcccgggcgaacaggtcgag
cgttccgagctgctcaacgagaacgaccgcgtggtcgccgaagagaagcgtccggcgcat
tacgacaacgttctgctgggtatcacgaaggcctcgctgtccacggactccttcatctcc
gcggcctcgttccaggaaacgacccgcgtgctgaccgaagcggccatcatgggcaagcgc
gacgacctgcgtggcctgaaggaaaacgtcatcgtgggccgtctgatcccggccggtacc
ggtctggcctaccaccttgcccgcaaggacaaggaggcgctggaagcggccgaacgcgaa
gccgcccgccagcaggccaaccccttcgaagacgtgccggtttcggctggcatcgattcg
gatggtccgctgtcgtccgacgacgagacgccggccgaataa
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