Bordetella pertussis Tohama I: BP0015
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Entry
BP0015 CDS
T00139
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpe
Bordetella pertussis Tohama I
Pathway
bpe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BP0015 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpe03021
]
BP0015 (rpoB)
03400 DNA repair and recombination proteins [BR:
bpe03400
]
BP0015 (rpoB)
Enzymes [BR:
bpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BP0015 (rpoB)
Transcription machinery [BR:
bpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BP0015 (rpoB)
DNA repair and recombination proteins [BR:
bpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BP0015 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
CAE40394
UniProt:
Q7W0R9
LinkDB
All DBs
Position
11662..15774
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSI
FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTIKE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKSEG
GMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDFLYGR
VLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTLRADE
TADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGDDS
TGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLVACREAGETMLTAPGNVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGT
TVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARG
DKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGATLTKAYLADLDRWQWFDIR
LADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGYRIADMLRDERTAQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPF
ATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagctttgccaaacgtgaggac
gttcaaaacgttcccttcctgttggcgacacagcttcaatcctacctaactttcctgcaa
gccgacaccgcgacctcggatcgcgtcaatgaaggtctgcaggcggcgttctcgtcgatt
tttccgattgtcagccataacggaatggcgcgcttggagttcgtcagctatgcgctgggc
gagccggtgtttgatgtcaaggaatgtcagcagcgcggcctgacctatgcgtcgccgctg
cgcgccaaggtgcgcctggtgctgctggaccgcgaagtcagcaagccgaccatcaaggaa
gtcaaggagcaggaagtctacatgggcgaaattccgctcatgaccggcaccggctcgttc
gtcatcaacggcaccgagcgcgtcatcgtctcgcagctgcatcgttcgccgggcgtgttc
ttcgagcacgaccgcggcaagacgcacagctcgggcaagctgctgttctcggcccgcgtg
attccctaccgcggctcgtggctggacttcgaattcgatcccaaggacgtgctgttcttc
cgcgtggaccgtcgccgcaagatgccggtgacgatcctgctgaaggccatcggcatgacg
cccgaatcgatcctcgcgcacttcttcgatttcgacaacttcgaactcaagagcgaaggc
ggcatgatggaattcgtcgccgaacgctggaagggcgagatggcgcgctttgacatcgcc
gaccgcgacggcaaggtgatcgtcgagaaggacaagcgtatcaacgccaagcacctgcgc
gacctggctgccggcggcatccagcgcgtgtcggtgcccgaggatttcctgtacggccgc
gtgctggccaagaacatcgtcgatcccgacaccggcgaagtcgtggcgcatgccaacgac
gagatcaccgaaagcgtgctcaacgcgatgcgcgccgccaacgtgcgcgacatccagacg
ctgtacaccaacgacctggatcgcggtccctacatttcgcagacgctgcgcgccgacgaa
accgccgaccagatggccgcgcgcgtggcgatctaccgcatgatgcgtcctggcgaaccg
cccaccgaagaagcggtggaagcgctgttccagcgtctgttctacagcgaagagacgtac
gacctgtcgcgcgtgggccgcatgaaggtcaacagccgcctgggtcgcggcgacgacagc
accggtccgatgacgctgaccaacgaggacatcctcgaaaccatcaaggtgctggtcgag
ctgcgcaacggccgtggccagatcgatgacatcgatcacctgggcaaccgccgcgtgcgt
tgtgtcggcgaactggccgagaaccagttccgcgctggcctggtgcgtgtcgagcgcgcc
gtcaaggagcgtctgggccaggccgagaccgaaaacctgatgccgcacgacctgatcaac
tccaagccgatctcggccgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccactgtcggaaatcacgcacaagcgtcgcgtttccgcactgggc
ccgggcggcctgacgcgcgaacgcgccggctttgaagtgcgcgacgtgcacccgacccac
tacggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcg
atggcgctttacgcgcgcctgaacgagtacggcttcctggaaaccccgtatcgcaagatc
atcgacggcaaggtcagcgaccagatcgactacctgtcggccatcgaggaaagccactac
gtgatcgcgcaggccaacgccgcgctcgatgacgaaggccgtttcgtcgacgacctggtg
gcttgccgcgaagcgggcgaaaccatgctgaccgcgccgggcaacgtgcactacatggac
gtggcgccgtcgcagatcgtgtcggtcgcggcgtcgctgatcccgttcctcgagcacgac
gacgccaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccttgcctgcgt
ccggaaaagccgctggtcggcaccggcgtcgagcgcaccgttgcggtcgactcgggcacg
accgtgcaggcgctgcgtggcggcgtggttgaccacgtcgacgccgaccgcgtcgtgatc
cgcgtcaacgacgaagagaacgtcgctggcgaagtgggcgtggacatctacaacctgatc
aagtacacgcgttccaaccagaacacgaacatcaaccagcgtcccatcgtggcccgcggc
gacaaggtcgccaagggtgacgtgctggccgacggcgcgtccaccgacctcggtgaactc
gcgctgggccagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaagac
tcgatcctgatctccgaacgcgtcgtggccgacgatcgctacacctcgatccacatcgaa
gagctgaccgtggtcgctcgcgatacgaagctgggacccgaggaaatcacgcgcgacatc
agcaacctggctgaaacgcagctcaaccgcctggatgactccggcatcgtctacattggc
gcggaagtcagcgccgacgacgtgctggtgggcaaggtcacgccgaagggcgaaacccag
ctcacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcttccgacgttaag
gacacctcgctgcgcgtgccctcgggcatgaccggcacggtgatcgacgtgcaggtgttc
acgcgcgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgttatcgccaggacctcaacgaccagctgcgcatcgtcgagaacgaccagttcgaccgt
atcgagaagatgctggtcggcaagaccgtcaatggcggcccgcgcaagctggccaagggc
gccaccttgaccaaggcctacctggccgacctggatcgctggcagtggttcgacatccgc
ctggccgacgaacagcacgctgtcgtgctggagcaggccaaggaatcgctcgagcagaag
cgccaccagttcgacctggccttcgaagagaagcgcaagaagctgacgcagggcgacgaa
ctgccgccgggcgtgctgaagatgatcaaggtctacctggccgtcaagcgccgcctgcag
ccgggcgacaagatggccggccgccacggcaacaagggcgtggtttcgcgcattacgccg
gtcgaggacatgccccacatggccgacggcactcccgccgacatcgttctgaacccgctg
ggcgtgccctcgcggatgaacgtcggccaggtgctggaagtccatctgggctgggccgcc
aagggcgtgggctaccgcatcgccgacatgctgcgcgacgagcgcacggcgcaggccaag
agcgtccgcggctacctggagaaggtgtacaacaccacgggcagcagcgcgcatatcgac
agcctgaccgacgaggaagtgctggaactggccaacaacctgaagaagggtgtgccgttt
gccacgccggtgttcgacggtgcgaccgaagaagaaatcggcaagatgctggaactggcc
tatcccgacgacgtcgccgcgcgcatgcgcctgacggcgtcgcgttcgcaggcatggctg
tatgacggccgtaccggcgagcagttcgagcgtccggtcacgatcggctacatgcactac
ctgaaactgcaccacttggtggacgacaagatgcacgcgcgttccaccggcccgtactcg
ctggttacccagcagccgttgggcggcaaggcgcagttcggcggtcagcgtttcggggaa
atggaagtgtgggcgctggaagcctacggcgcctcctacaccctgcaggaaatgctgacg
gtgaagtccgacgacatcaccggccgcacgaaggtttacgaaaacatcgtcaagggcgac
cacgtcatcgatgccggcatgccggaatcgttcaacgtgctggtcaaggaaattcgctcg
ctggccctggacatggatttggagcgtaactga
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integrated database retrieval system
