Bordetella pertussis Tohama I: BP1980
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Entry
BP1980 CDS
T00139
Name
(GenBank) probable ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bpe
Bordetella pertussis Tohama I
Pathway
bpe03420
Nucleotide excision repair
bpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BP1980
03430 Mismatch repair
BP1980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpe03400
]
BP1980
Enzymes [BR:
bpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BP1980
DNA repair and recombination proteins [BR:
bpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BP1980
MMR (mismatch excision repair)
Other MMR factors
BP1980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
HHH
DUF7158
Motif
Other DBs
NCBI-ProteinID:
CAE42260
UniProt:
Q7VX41
LinkDB
All DBs
Position
2088531..2090624
Genome browser
AA seq
697 aa
AA seq
DB search
MSEPVSRAPAPADDPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHL
ILHGADPQRMLLLTFSRRAAQEMERRVGGVLQRVMGLRAGHAAPALPWAGTFHSVGARLL
RDCAPRIGLSEAFTVHDRGDAEDLMGIVRHELGLSATHNRFPLKGTCLAIYSRVVNSQAP
LAEVLRQAFPWCEAWEAELKRLFQAYVLAKQEQNVLDYDDLLLYWAEMMRDAGLAADVGA
RFDHILVDEYQDTNRLQAAILLAMKPDGGGLTVVGDDAQSIYSFRAASVRNILDFPQQFP
GGAKVVTLERNYRSTQPILDASNAVIGLAAERYAKALWTDRASSQRPELVSVSDEAGQAR
WVADQVLAQREGGATLKSQAALFRASSHSAALELELTRRNIPFVKFGGLRFLEAAHVKDM
LSVLRWAENPRSRLAGFRVAQLVPGIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQ
WSEFVATYATLREARRPWPADVDAALQWYGPQLERIFDDARVRRADLEQLARLAGGYPTR
ERFLTELTLDPPDATSDESGPPLRDEDYMILSTIHSAKGQEWKSVYILNAVDGCMPSDMA
TGTAEEIEEERRLLYVAMTRARERLQVVVPQRFYVHQQAGLGDRHVYGSRTRFISEAMLP
LFEHLPKPPELPFDRARPIEPAAPRIDVVSRVRGLFS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctgtttcccgcgcccccgcgcccgccgatgatcccctggccgaactgaac
cccgcgcagcgcgaggccgccgcgtacggggtcgatgcgccggccagccaggcgctgctg
gtgatcgccggggccgggtcgggcaagaccaacacgctggcgcaccgcgtggcgcacctg
atcctgcatggcgccgatccgcagcgcatgctgctgttgacgttctcgcgccgcgccgcg
caggaaatggaacggcgcgtgggcggcgtgctgcagcgcgtgatgggcctgcgcgccggg
cacgcggcgcctgcgctgccgtgggccggcacgttccacagcgtgggcgcgcggctgctg
cgcgattgcgcgccgcgcatcggcctgtcggaggccttcactgtgcacgatcgcggcgac
gccgaggacttgatgggcatcgtgcgccacgagctggggctgtcggccacccacaaccgg
ttcccgctcaagggcacctgcctggccatttattcgcgcgtggtcaacagccaggcgccg
ctggccgaggtgctgcgccaggcgttcccgtggtgcgaagcctgggaggccgagctcaag
cgcctgttccaggcctatgtgctggccaagcaggagcagaacgtgctcgattacgacgac
ctgctgctgtactgggccgagatgatgcgcgacgcggggctggccgccgacgtcggcgcg
cgcttcgaccatatcctggtcgacgagtaccaggacaccaaccgcctgcaggccgccatc
ctgctggccatgaagcccgacggcggcggcctgaccgtggtgggcgacgacgcgcagtcg
atctattcgttccgcgccgcgagcgtgcgcaacatcctcgatttcccgcagcagtttccc
ggcggcgccaaggtggtcacgctggagcgcaattaccgctccacccagcccatcctggat
gcgtccaacgcggtcatcgggctggccgccgaacgctacgccaaagcgctgtggaccgat
cgtgcctcgtcgcagcgccccgagctggtgagcgtcagcgacgaagccggccaggcgcgc
tgggtggccgaccaggtgctggcgcagcgcgagggcggggccacgctcaagtcgcaggcg
gcgctgtttcgcgcctccagccacagcgccgcgctggagctggagctgacccggcgcaac
atcccgttcgtgaaattcggcggcctgcgctttctcgaggccgcccatgtcaaggacatg
ctgtccgtgctgcgctgggccgagaacccgcgctcccggctggccggtttccgggtggcg
cagctggtgcccggcatcggcccggccaccgccggcaagctgatggacgccatggcgcag
gcggccgatccgctggcggccatgcgcgagttccagccgggcgcggcggcgcgccagcag
tggagcgaattcgtcgccacctacgcgacgctgcgcgaggcgcgccggccctggcccgcc
gacgtggatgccgcgctgcaatggtacgggccgcaactggagcgcatcttcgacgacgcg
cgcgtgcgccgcgccgacctggagcagctggcccgcctggccggcggctatccgacgcgc
gaacgcttcctcaccgagctgacgctggacccgcccgacgcgaccagcgacgagtccggt
ccgccgctgcgcgacgaagactatatgatcctgtccaccatccactcggccaagggccag
gagtggaagtcggtctacatcctgaacgcggtcgacggctgcatgccctcggacatggcc
accggcacggccgaggagatcgaggaagagcggcgcctgctgtacgtggcgatgacgcgc
gcgcgcgagcggctgcaggtggtggtgccgcagcgcttctacgtgcaccagcaggccggg
ctgggcgaccgccacgtctacggctcgcgcacccgcttcatttccgaggccatgctgccg
ctgttcgagcacctgcccaagccgcccgagctgccgttcgaccgcgcccgccccatcgag
ccggccgcgccgcgcatcgacgtggtcagccgggtgcgcgggctgttctcgtag
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