Bordetella pertussis Tohama I: BP2042
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Entry
BP2042 CDS
T00139
Symbol
holA
Name
(GenBank) putative DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
bpe
Bordetella pertussis Tohama I
Pathway
bpe03030
DNA replication
bpe03430
Mismatch repair
bpe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BP2042 (holA)
03430 Mismatch repair
BP2042 (holA)
03440 Homologous recombination
BP2042 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpe03032
]
BP2042 (holA)
03400 DNA repair and recombination proteins [BR:
bpe03400
]
BP2042 (holA)
Enzymes [BR:
bpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BP2042 (holA)
DNA replication proteins [BR:
bpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BP2042 (holA)
DNA repair and recombination proteins [BR:
bpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BP2042 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delt_C
Motif
Other DBs
NCBI-ProteinID:
CAE42321
UniProt:
Q7VWY9
LinkDB
All DBs
Position
complement(2159794..2160849)
Genome browser
AA seq
351 aa
AA seq
DB search
MAAPLDSDALASHLARAGGRLAPLYTVSGDEPLLVTEAADAIRAAARAAGYTDRTSMVMD
ARSDWSAVAAATQSVSLFGDRRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVV
ALPRLDKATRESKWAQALARGGVMADIANVERGRLPAWIGMRLGRQNQRADTATLQWMAD
KVEGNLLAAHQEIQKLGLLYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRM
LDGLRAEGEALPLVLWAVGEEIRLLARVAQARQQGQDAGALMRRLRIFGAHERLALQALG
RVAPGAWPAAVQHAHEVDRLIKGLSVPGRLADPWEEMTRLALRVAAAGARP
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcccctggacagcgacgccctggccagccacctcgcacgcgcggggggccgg
ctggcgccgctgtacacggtatcgggcgacgagccgctgctggtcaccgaggccgccgac
gccatccgcgcggcggcgcgcgcggccggctacaccgaccgcacctccatggtcatggac
gcgcgcagcgactggagcgcggtggcggccgccacgcaaagcgtctcgctgttcggcgac
cggcgcctgctggaactgaaaatcccgaccggcaagcccggcaagagcggcggcgagatg
ctggcccggctggccgaccaggcgcgcgaccaggccgacgccgacacgctcgtggtcgtg
gccctgccccgcctggacaaggccacgcgcgaaagcaaatgggcccaggcgctggcgcgc
ggcggcgtcatggccgacatcgccaacgtcgagcgcggccgcctgccggcatggattggc
atgcgcctggggcgccagaaccagcgcgccgacaccgccacgctgcaatggatggccgac
aaggtcgagggcaacctgctggcggcccaccaggaaatccagaagctggggctgctttat
ccggaaggccagctggccgccgaggacgtcgagcgcgccgtgctcaacgtggcgcgctac
gacgtcttcgggctgcgcgacgccatgctggccggcgacacggcgcgcacggtgcgcatg
ctcgacggcttgcgcgccgagggcgaagccctgccgctggtgctgtgggcggtcggcgag
gaaatccgcctgctggcgcgcgtagcgcaggcgcgccagcaaggccaggacgccggcgca
ctgatgcgccgtctgcgcattttcggcgcccacgaacggcttgcgctgcaagcgctgggc
cgggtcgcacccggcgcatggccggcagccgtgcagcacgcccatgaagtcgatcgcctg
atcaaaggcctgagcgtaccgggccggctggccgatccctgggaagaaatgacccggctc
gcgctgcgcgtggccgcggccggcgcccgaccgtga
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